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Technische Universität München
Technische Universität München

Publications

2024

  • Graf, Alina; Bassukas, Alkistis Eleftheria Lanassa; Xiao, Yao; Barbosa, Inês C. R.; Mergner, Julia; Grill, Peter; Michalke, Bernhard; Kuster, Bernhard; Schwechheimer, Claus: D6PK plasma membrane polarity requires a repeated CXX(X)P motif and PDK1-dependent phosphorylation. Nature Plants, 2024 mehr…
  • Han, Rui; Baudrexl, Melanie; Ludwig, Christina; Berezina, Oksana V.; Rykov, Sergey V.; Liebl, Wolfgang: Identification of a novel xanthan-binding module of a multi-modular Cohnella sp. xanthanase. Frontiers in Microbiology 15, 2024 mehr…
  • Heppner, Nina; Reitmeier, Sandra; Heddes, Marjolein; Merino, Michael Vig; Schwartz, Leon; Dietrich, Alexander; List, Markus; Gigl, Michael; Meng, Chen; van der Veen, Daan R.; Schirmer, Melanie; Kleigrewe, Karin; Omer, Hélène; Kiessling, Silke; Haller, Dirk: Diurnal rhythmicity of infant fecal microbiota and metabolites: A randomized controlled interventional trial with infant formula. Cell Host & Microbe, 2024 mehr…
  • Hoermann, Bernhard; Dürr, Eva-Maria; Ludwig, Christina; Ercan, Melda; Köhn, Maja: A strategy to disentangle direct and indirect effects on (de)phosphorylation by chemical modulators of the phosphatase PP1 in complex cellular contexts. Chemical Science 15 (8), 2024, 2792-2804 mehr…
  • Khan, Muhammad Moman; Sidorczuk, Katarzyna; Becker, Juliane; Aleksandrowicz, Adrianna; Baraniewicz, Karolina; Ludwig, Christina; Ali, Aamir; Kingsley, Robert A.; Schierack, Peter; Kolenda, Rafał: Characterization of clumpy adhesion of <i>Escherichia coli</i> to human cells and associated factors influencing antibiotic sensitivity. Microbiology Spectrum, 2024 mehr…
  • Kratzl, Franziska; Urban, Marlene; Pandhal, Jagroop; Shi, Mengxun; Meng, Chen; Kleigrewe, Karin; Kremling, Andreas; Pflüger-Grau, Katharina: Pseudomonas putida as saviour for troubled Synechococcus elongatus in a synthetic co-culture – interaction studies based on a multi-OMICs approach. Communications Biology 7 (1), 2024 mehr…
  • Lier, Svenja; Sellmer, Andreas; Orben, Felix; Heinzlmeir, Stephanie; Krauß, Lukas; Schneeweis, Christian; Hassan, Zonera; Schneider, Carolin; Schäfer, Arlette; Pongratz, Herwig; Engleitner, Thomas; Öllinger, Rupert; Kuisl, Anna; Bassermann, Florian; Schlag, Christoph; Kong, Bo; Dove, Stefan; Kuster, Bernhard; Rad, Roland; Reichert, Maximilian; Wirth, Matthias; Saur, Dieter; Mahboobi, Siavosh; Schneider, Günter: Corrigendum to “A novel Cereblon E3 ligase modulator with antitumor activity in gastrointestinal cancer” [Bioorgan. Chem. 119 (2022) 105505]. Bioorganic Chemistry, 2024, 107248 mehr…
  • Liu, Yajing; Angelov, Angel; Übelacker, Maria; Baudrexl, Melanie; Ludwig, Christina; Rühmann, Broder; Sieber, Volker; Liebl, Wolfgang: Proteomic analysis of Viscozyme L and its major enzyme components for pectic substrate degradation. International Journal of Biological Macromolecules 266, 2024, 131309 mehr…
  • Muñoz Hoyos, Lina; Anisha, Wan Petra; Meng, Chen; Kleigrewe, Karin; Dawid, Corinna; Hückelhoven, Ralph; Stam, Remco: Untargeted metabolomics reveals PTI‐associated metabolites. Plant, Cell &amp; Environment, 2024 mehr…
  • Pfäffle, Simon P.; Herz, Corinna; Brombacher, Eva; Proietti, Michele; Gigl, Michael; Hofstetter, Christoph K.; Mittermeier-Kleßinger, Verena K.; Claßen, Sophie; Tran, Hoai T. T.; Dawid, Corinna; Kreutz, Clemens; Günther, Stefan; Lamy, Evelyn: A 14-Day Double-Blind, Randomized, Controlled Crossover Intervention Study with Anti-Bacterial Benzyl Isothiocyanate from Nasturtium (Tropaeolum majus) on Human Gut Microbiome and Host Defense. Nutrients 16 (3), 2024, 373 mehr…
  • Thiele Orberg, Erik; Meedt, Elisabeth; Hiergeist, Andreas; Xue, Jinling; Heinrich, Paul; Ru, Jinlong; Ghimire, Sakhila; Miltiadous, Oriana; Lindner, Sarah; Tiefgraber, Melanie; Göldel, Sophia; Eismann, Tina; Schwarz, Alix; Göttert, Sascha; Jarosch, Sebastian; Steiger, Katja; Schulz, Christian; Gigl, Michael; Fischer, Julius C.; Janssen, Klaus-Peter; Quante, Michael; Heidegger, Simon; Herhaus, Peter; Verbeek, Mareike; Ruland, Jürgen; van den Brink, Marcel R. M.; Weber, Daniela; Edinger, Matthias; Wolff, Daniel; Busch, Dirk H.; Kleigrewe, Karin; Herr, Wolfgang; Bassermann, Florian; Gessner, André; Deng, Li; Holler, Ernst; Poeck, Hendrik: Bacteria and bacteriophage consortia are associated with protective intestinal metabolites in patients receiving stem cell transplantation. Nature Cancer, 2024 mehr…
  • Tretter, Celina; de Andrade Krätzig, Niklas; Pecoraro, Matteo; Lange, Sebastian; Seifert, Philipp; von Frankenberg, Clara; Untch, Johannes; Zuleger, Gabriela; Wilhelm, Mathias; Zolg, Daniel P.; Dreyer, Florian S.; Bräunlein, Eva; Engleitner, Thomas; Uhrig, Sebastian; Boxberg, Melanie; Steiger, Katja; Slotta-Huspenina, Julia; Ochsenreither, Sebastian; von Bubnoff, Nikolas; Bauer, Sebastian; Boerries, Melanie; Jost, Philipp J.; Schenck, Kristina; Dresing, Iska; Bassermann, Florian; Friess, Helmut; Reim, Daniel; Grützmann, Konrad; Pfütze, Katrin; Klink, Barbara; Schröck, Evelin; Haller, Bernhard; Kuster, Bernhard; Mann, Matthias; Weichert, Wilko; Fröhling, Stefan; Rad, Roland; Hiltensperger, Michael; Krackhardt, Angela M.: Author Correction: Proteogenomic analysis reveals RNA as a source for tumor-agnostic neoantigen identification. Nature Communications 15 (1), 2024 mehr…
  • Van Bael, Sven; Ludwig, Christina; Baggerman, Geert; Temmerman, Liesbet: Identification and Targeted Quantification of Endogenous Neuropeptides in the Nematode Caenorhabditis elegans Using Mass Spectrometry. In: Methods in Molecular Biology. Springer US, 2024 mehr…
  • Voronina, Liudmila; Fleischmann, Frank; Šimunović, Jelena; Ludwig, Christina; Novokmet, Mislav; Žigman, Mihaela: Probing Blood Plasma Protein Glycosylation with Infrared Spectroscopy. Analytical Chemistry, 2024 mehr…
  • Wiese, Christian; Abele, Miriam; Al, Benjamin; Altmann, Melina; Steiner, Alexander; Kalbfuß, Nils; Strohmayr, Alexander; Ravikumar, Raksha; Park, Chan Ho; Brunschweiger, Barbara; Meng, Chen; Facher, Eva; Ehrhardt, David W.; Falter-Braun, Pascal; Wang, Zhi-Yong; Ludwig, Christina; Assaad, Farhah F.: Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in <i>Arabidopsis</i>. Journal of Cell Biology 223 (5), 2024 mehr…
  • Yoshida, Takuya; Mergner, Julia; Yang, Zhenyu; Liu, Jinghui; Kuster, Bernhard; Fernie, Alisdair R.; Grill, Erwin: Integrating multi‐omics data reveals energy and stress signaling activated by abscisic acid in Arabidopsis. The Plant Journal, 2024 mehr…
  • Yu, Mia S. C.; Chiang, Dapi Menglin; Reithmair, Marlene; Meidert, Agnes; Brandes, Florian; Schelling, Gustav; Ludwig, Christina; Meng, Chen; Kirchner, Benedikt; Zenner, Christian; Muller, Laurent; Pfaffl, Michael W.: The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media. Frontiers in Microbiology 15, 2024 mehr…

2023

  • Abele, Miriam; Doll, Etienne; Bayer, Florian P.; Meng, Chen; Lomp, Nina; Neuhaus, Klaus; Scherer, Siegfried; Kuster, Bernhard; Ludwig, Christina: Unified workflow for the rapid and in-depth characterization of bacterial proteomes. Molecular &amp; Cellular Proteomics, 2023, 100612 mehr…
  • Bimmer, Martin; Reimer, Martin; Klingl, Andreas; Ludwig, Christina; Zollfrank, Cordt; Liebl, Wolfgang; Ehrenreich, Armin: Analysis of cellulose synthesis in a high-producing acetic acid bacterium Komagataeibacter hansenii. Applied Microbiology and Biotechnology, 2023 mehr…
  • Bolsega, Silvia; Smoczek, Anna; Meng, Chen; Kleigrewe, Karin; Scheele, Tim; Meller, Sebastian; Glage, Silke; Volk, Holger A.; Bleich, André; Basic, Marijana: The Genetic Background Is Shaping Cecal Enlargement in the Absence of Intestinal Microbiota. Nutrients 15 (3), 2023, 636 mehr…
  • Ecker, Veronika; Brandmeier, Lisa; Stumpf, Martina; Giansanti, Piero; Moreira, Aida Varela; Pfeuffer, Lisa; Fens, Marcel H.A.M.; Lu, Junyan; Kuster, Bernhard; Engleitner, Thomas; Heidegger, Simon; Rad, Roland; Ringshausen, Ingo; Zenz, Thorsten; Wendtner, Clemens-Martin; Müschen, Markus; Jellusova, Julia; Ruland, Jürgen; Buchner, Maike: Negative feedback regulation of MAPK signaling is an important driver of chronic lymphocytic leukemia progression. Cell Reports 42 (10), 2023, 113017 mehr…
  • Effinger, David; Hirschberger, Simon; Yoncheva, Polina; Schmid, Annika; Heine, Till; Newels, Patrick; Schütz, Burkhard; Meng, Chen; Gigl, Michael; Kleigrewe, Karin; Holdt, Lesca-Miriam; Teupser, Daniel; Kreth, Simone: A ketogenic diet substantially reshapes the human metabolome. Clinical Nutrition 42 (7), 2023, 1202-1212 mehr…
  • Emslander, Quirin; Krey, Karsten; Hamad, Sabri; Maidl, Susanne; Oubraham, Lila; Hesse, Joshua; Henrici, Alexander; Austen, Katharina; Mergner, Julia; Grass, Vincent; Pichlmair, Andreas: MDM2 Influences ACE2 Stability and SARS-CoV-2 Uptake. Viruses 15 (8), 2023, 1763 mehr…
  • Esser, Knud; Cheng, Xiaoming; Wettengel, Jochen M.; Lucifora, Julie; Hansen-Palmus, Lea; Austen, Katharina; Suarez, Armando A.R.; Heintz, Sarah; Testoni, Barbara; Nebioglu, Firat; Pham, Minh Tu; Yang, Shangqing; Zernecke, Alma; Wohlleber, Dirk; Ringelhan, Marc; Broxtermann, Mathias; Hartmann, Daniel; Hüser, Norbert; Mergner, Julia; Pichlmair, Andreas; Thasler, Wolfgang E.; Heikenwalder, Mathias; Gasteiger, Georg; Blutke, Andreas; Walch, Axel; Knolle, Percy A.; Bartenschlager, Ralf; Protzer, Ulrike: Hepatitis B virus targets lipid transport pathways to infect hepatocytes. Cellular and Molecular Gastroenterology and Hepatology, 2023 mehr…
  • Hofstetter, Christoph Konrad; Dunkel, Andreas; Bussy, Ugo; Wimmer, Miriam; Kauz, Thomas; Stark, Timo D.; Didzbalis, John; Dawid, Corinna; Hofmann, Thomas: Toward Unified Flavor Quantitation in Cocoa-Based Products. Journal of Agricultural and Food Chemistry, 2023 mehr…
  • Inhuber, Vivienne; Windisch, Wilhelm; Kleigrewe, Karin; Meng, Chen; Bächler, Benedikt; Gigl, Michael; Steinhoff-Wagner, Julia; Ettle, Thomas: Effect of Rumen-Protected Methionine on Metabolic Profile of Liver, Muscle and Blood Serum Samples of Growing German Simmental Bulls Fed Protein-Reduced Diets. Metabolites 13 (8), 2023, 946 mehr…
  • Janda, Martin; Rybak, Katarzyna; Krassini, Laura; Meng, Chen; Feitosa-Junior, Oséias; Stigliano, Egidio; Szulc, Beata; Sklenar, Jan; Menke, Frank L.H.; Malone, Jacob G.; Brachmann, Andreas; Klingl, Andreas; Ludwig, Christina; Robatzek, Silke: Biophysical and proteomic analyses of <i>Pseudomonas syringae</i> pv. <i>tomato</i> DC3000 extracellular vesicles suggest adaptive functions during plant infection. mBio, 2023 mehr…
  • Joachim, Laura; Göttert, Sascha; Sax, Anna; Steiger, Katja; Neuhaus, Klaus; Heinrich, Paul; Fan, Kaiji; Orberg, Erik Thiele; Kleigrewe, Karin; Ruland, Jürgen; Bassermann, Florian; Herr, Wolfgang; Posch, Christian; Heidegger, Simon; Poeck, Hendrik: The microbial metabolite desaminotyrosine enhances T-cell priming and cancer immunotherapy with immune checkpoint inhibitors. eBioMedicine 97, 2023, 104834 mehr…
  • Kardell, Oliver; von Toerne, Christine; Merl-Pham, Juliane; König, Ann-Christine; Blindert, Marcel; Barth, Teresa K.; Mergner, Julia; Ludwig, Christina; Tüshaus, Johanna; Eckert, Stephan; Müller, Stephan A.; Breimann, Stephan; Giesbertz, Pieter; Bernhardt, Alexander M.; Schweizer, Lisa; Albrecht, Vincent; Teupser, Daniel; Imhof, Axel; Kuster, Bernhard; Lichtenthaler, Stefan F.; Mann, Matthias; Cox, Jürgen; Hauck, Stefanie M.: Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens. Journal of Proteome Research, 2023 mehr…
  • Krumm, Johannes; Petrova, Elissaveta; Lechner, Severin; Mergner, Julia; Boehm, Hans-Henning; Prestipino, Alessandro; Steinbrunn, Dominik; Deline, Marshall L.; Koetzner, Lisa; Schindler, Christina; Helming, Laura; Fromme, Tobias; Klingenspor, Martin; Hahne, Hannes; Pieck, Jan-Carsten; Kuster, Bernhard: High-throughput screening and proteomic characterization of compounds targeting myeloid-derived suppressor cells. Molecular &amp; Cellular Proteomics, 2023, 100632 mehr…
  • Lechner, Severin; Steimbach, Raphael R.; Wang, Longlong; Deline, Marshall L.; Chang, Yun-Chien; Fromme, Tobias; Klingenspor, Martin; Matthias, Patrick; Miller, Aubry K.; Médard, Guillaume; Kuster, Bernhard: Chemoproteomic target deconvolution reveals Histone Deacetylases as targets of (R)-lipoic acid. Nature Communications 14 (1), 2023 mehr…
  • Lee, Chien-Yun; The, Matthew; Meng, Chen; Bayer, Florian P; Putzker, Kerstin; Müller, Julian; Streubel, Johanna; Woortman, Julia; Sakhteman, Amirhossein; Resch, Moritz; Schneider, Annika; Wilhelm, Stephanie; Kuster, Bernhard: Illuminating phenotypic drug responses of sarcoma cells to kinase inhibitors by phosphoproteomics. Molecular Systems Biology 20 (1), 2023, 28-55 mehr…
  • Noszka, Mateusz; Strzałka, Agnieszka; Muraszko, Jakub; Kolenda, Rafał; Meng, Chen; Ludwig, Christina; Stingl, Kerstin; Zawilak-Pawlik, Anna: Profiling of the Helicobacter pylori redox switch HP1021 regulon using a multi-omics approach. Nature Communications 14 (1), 2023 mehr…
  • Němec, Václav; Khirsariya, Prashant; Janovská, Pavlína; Moyano, Paula Martín; Maier, Lukáš; Procházková, Petra; Kebková, Pavlína; Gybel', Tomáš; Berger, Benedict‐Tilman; Chaikuad, Apirat; Reinecke, Maria; Kuster, Bernhard; Knapp, Stefan; Bryja, Vítězslav; Paruch, Kamil: Discovery of Potent and Exquisitely Selective Inhibitors of Kinase CK1 with Tunable Isoform Selectivity. Angewandte Chemie International Edition, 2023 mehr…
  • Parmar, Bhavesh S.; Kieswetter, Amanda; Geens, Ellen; Vandewyer, Elke; Ludwig, Christina; Temmerman, Liesbet: azyx-1 is a new gene that overlaps with zyxin and affects its translation in C. elegans, impacting muscular integrity and locomotion. PLOS Biology 21 (9), 2023, e3002300 mehr…
  • Reinecke, Maria; Brear, Paul; Vornholz, Larsen; Berger, Benedict-Tilmann; Seefried, Florian; Wilhelm, Stephanie; Samaras, Patroklos; Gyenis, Laszlo; Litchfield, David William; Médard, Guillaume; Müller, Susanne; Ruland, Jürgen; Hyvönen, Marko; Wilhelm, Mathias; Kuster, Bernhard: Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors. Nature Chemical Biology, 2023 mehr…
  • Schirmer, Tanja Miriam; Ludwig, Christina; Scherf, Katharina Anne: Proteomic Characterization of Wheat Protein Fractions Taken at Different Baking Conditions. Journal of Agricultural and Food Chemistry, 2023 mehr…
  • Sen, Payel; Shashikadze, Bachuki; Flenkenthaler, Florian; Van de Kamp, Esther; Tian, Siyu; Meng, Chen; Gigl, Michael; Fröhlich, Thomas; Merkus, Daphne: Proteomics- and Metabolomics-Based Analysis of Metabolic Changes in a Swine Model of Pulmonary Hypertension. International Journal of Molecular Sciences 24 (5), 2023, 4870 mehr…
  • Sun, Guangxin; Liao, Jieren; Kurze, Elisabeth; Hoffmann, Timothy D.; Steinchen, Wieland; McGraphery, Kate; Habegger, Ruth; Marek, Ludwig; Catici, Dragana A.M.; Ludwig, Christina; Jing, Tingting; Hoffmann, Thomas; Song, Chuankui; Schwab, Wilfried: Apocarotenoids are allosteric effectors of a dimeric plant glycosyltransferase involved in defense and lignin formation. New Phytologist, 2023 mehr…
  • Tretter, Celina; de Andrade Krätzig, Niklas; Pecoraro, Matteo; Lange, Sebastian; Seifert, Philipp; von Frankenberg, Clara; Untch, Johannes; Zuleger, Gabriela; Wilhelm, Mathias; Zolg, Daniel P.; Dreyer, Florian S.; Bräunlein, Eva; Engleitner, Thomas; Uhrig, Sebastian; Boxberg, Melanie; Steiger, Katja; Slotta-Huspenina, Julia; Ochsenreither, Sebastian; von Bubnoff, Nikolas; Bauer, Sebastian; Boerries, Melanie; Jost, Philipp J.; Schenck, Kristina; Dresing, Iska; Bassermann, Florian; Friess, Helmut; Reim, Daniel; Grützmann, Konrad; Pfütze, Katrin; Klink, Barbara; Schröck, Evelin; Haller, Bernhard; Kuster, Bernhard; Mann, Matthias; Weichert, Wilko; Fröhling, Stefan; Rad, Roland; Hiltensperger, Michael; Krackhardt, Angela M.: Proteogenomic analysis reveals RNA as a source for tumor-agnostic neoantigen identification. Nature Communications 14 (1), 2023 mehr…
  • Tröster, Alix; DiPrima, Michael; Jores, Nathalie; Kudlinzki, Denis; Sreeramulu, Sridhar; Gande, Santosh L.; Linhard, Verena; Ludig, Damian; Schug, Alexander; Saxena, Krishna; Reinecke, Maria; Heinzlmeir, Stephanie; Leisegang, Matthias S.; Wollenhaupt, Jan; Lennartz, Frank; Weiss, Manfred S.; Kuster, Bernhard; Tosato, Giovanna; Schwalbe, Harald: Optimization of the Lead Compound NVP‐BHG712 as a Colorectal Cancer Inhibitor. Chemistry – A European Journal 29 (23), 2023 mehr…
  • Weiss, Anna S.; Niedermeier, Lisa S.; von Strempel, Alexandra; Burrichter, Anna G.; Ring, Diana; Meng, Chen; Kleigrewe, Karin; Lincetto, Chiara; Hübner, Johannes; Stecher, Bärbel: Nutritional and host environments determine community ecology and keystone species in a synthetic gut bacterial community. Nature Communications 14 (1), 2023 mehr…
  • Wu, Chenhao; Mori, Matteo; Abele, Miriam; Banaei-Esfahani, Amir; Zhang, Zhongge; Okano, Hiroyuki; Aebersold, Ruedi; Ludwig, Christina; Hwa, Terence: Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves. Nature Microbiology 8 (2), 2023, 347-359 mehr…
  • Wudy, Susanne I.; Mittermeier-Klessinger, Verena K.; Dunkel, Andreas; Kleigrewe, Karin; Ensenauer, Regina; Dawid, Corinna; Hofmann, Thomas F.: High-Throughput Analysis of Underivatized Amino Acids and Acylcarnitines in Infant Serum: A Micromethod Based on Stable Isotope Dilution Targeted HILIC-ESI-MS/MS. Journal of Agricultural and Food Chemistry, 2023 mehr…
  • Yang, Yuankun; Steidele, Christina E.; Rössner, Clemens; Löffelhardt, Birgit; Kolb, Dagmar; Leisen, Thomas; Zhang, Weiguo; Ludwig, Christina; Felix, Georg; Seidl, Michael F.; Becker, Annette; Nürnberger, Thorsten; Hahn, Matthias; Gust, Bertolt; Gross, Harald; Hückelhoven, Ralph; Gust, Andrea A.: Convergent evolution of plant pattern recognition receptors sensing cysteine-rich patterns from three microbial kingdoms. Nature Communications 14 (1), 2023 mehr…
  • Zhou, Liang-Zi; Wang, Lele; Chen, Xia; Ge, Zengxiang; Mergner, Julia; Li, Xingli; Küster, Bernhard; Längst, Gernot; Qu, Li-Jia; Dresselhaus, Thomas: The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell, 2023 mehr…
  • von Strempel, Alexandra; Weiss, Anna S.; Wittmann, Johannes; Salvado Silva, Marta; Ring, Diana; Wortmann, Esther; Clavel, Thomas; Debarbieux, Laurent; Kleigrewe, Karin; Stecher, Bärbel: Bacteriophages targeting protective commensals impair resistance against Salmonella Typhimurium infection in gnotobiotic mice. PLOS Pathogens 19 (8), 2023, e1011600 mehr…

2022

  • Alka, Oliver; Shanthamoorthy, Premy; Witting, Michael; Kleigrewe, Karin; Kohlbacher, Oliver; Röst, Hannes L.: DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics. Nature Communications 13 (1), 2022 mehr…
  • Altaha, Baraa; Heddes, Marjolein; Pilorz, Violetta; Niu, Yunhui; Gorbunova, Elizaveta; Gigl, Michael; Kleigrewe, Karin; Oster, Henrik; Haller, Dirk; Kiessling, Silke: Genetic and environmental circadian disruption induce weight gain through changes in the gut microbiome. Molecular Metabolism, 2022, 101628 mehr…
  • Balakrishnan, Rohan; Mori, Matteo; Segota, Igor; Zhang, Zhongge; Aebersold, Ruedi; Ludwig, Christina; Hwa, Terence: Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria. Science 378 (6624), 2022 mehr…
  • Baur, Sebastian; Bellé, Nicole; Frank, Oliver; Wurzer, Sebastian; Pieczonka, Stefan Alexander; Fromme, Tobias; Stam, Remco; Hausladen, Hans; Hofmann, Thomas; Hückelhoven, Ralph; Dawid, Corinna: Steroidal Saponins─New Sources to Develop Potato (<i>Solanum tuberosum</i> L.) Genotypes Resistant against Certain <i>Phytophthora infestans</i> Strains. Journal of Agricultural and Food Chemistry 70 (24), 2022, 7447-7459 mehr…
  • Berry, Brandon J.; Vodičková, Anežka; Müller-Eigner, Annika; Meng, Chen; Ludwig, Christina; Kaeberlein, Matt; Peleg, Shahaf; Wojtovich, Andrew P.: Optogenetic rejuvenation of mitochondrial membrane potential extends C. elegans lifespan. Nature Aging 3 (2), 2022, 157-161 mehr…
  • Bockwoldt, Julia A.; Meng, Chen; Ludwig, Christina; Kupetz, Michael; Ehrmann, Matthias A.: Proteomic Analysis Reveals Enzymes for β-D-Glucan Formation and Degradation in Levilactobacillus brevis TMW 1.2112. International Journal of Molecular Sciences 23 (6), 2022, 3393 mehr…
  • Chebib, Soraya; Meng, Chen; Ludwig, Christina; Bergmann, Karl-Christian; Becker, Sylvia; Dierend, Werner; Schwab, Wilfried: Identification of allergenomic signatures in allergic and well-tolerated apple genotypes using LC-MS/MS. Food Chemistry: Molecular Sciences 4, 2022, 100111 mehr…
  • Chiang, Dapi Menglin; Benecke, Laura; Meng, Chen; Ludwig, Christina; Muller, Laurent; Pfaffl, Michael W.: Proteomic profiling of extracellular vesicles suggests Collectin10 as potential biomarker in relapsing head and neck squamous cell carcinoma. Novel methods and insights: A profound look at the function of extracellular vesicles 4 (1), 2022, 9-17 mehr…
  • Cockx, Bram; Van Bael, Sven; Boelen, Rose; Vandewyer, Elke; Yang, Heeseung; Le, Tuan Anh; Dalzell, Johnathan J.; Beets, Isabel; Ludwig, Christina; Lee, Junho; Temmerman, Liesbet: Mass spectrometry-driven discovery of neuropeptides mediating nictation behavior of nematodes. Molecular &amp; Cellular Proteomics, 2022, 100479 mehr…
  • Emslander, Quirin; Vogele, Kilian; Braun, Peter; Stender, Jana; Willy, Christian; Joppich, Markus; Hammerl, Jens A.; Abele, Miriam; Meng, Chen; Pichlmair, Andreas; Ludwig, Christina; Bugert, Joachim J.; Simmel, Friedrich C.; Westmeyer, Gil G.: Cell-free production of personalized therapeutic phages targeting multidrug-resistant bacteria. Cell Chemical Biology, 2022 mehr…
  • Fuertes-Perez, Sandra; Abele, Miriam; Ludwig, Christina; Vogel, Rudi F.; Hilgarth, Maik: Impact of Modified Atmospheres on Growth and Metabolism of Meat-Spoilage Relevant Photobacterium spp. as Predicted by Comparative Proteomics. Frontiers in Microbiology 13, 2022 mehr…
  • Gabriel, Wassim; The, Matthew; Zolg, Daniel P.; Bayer, Florian P.; Shouman, Omar; Lautenbacher, Ludwig; Schnatbaum, Karsten; Zerweck, Johannes; Knaute, Tobias; Delanghe, Bernard; Huhmer, Andreas; Wenschuh, Holger; Reimer, Ulf; Médard, Guillaume; Kuster, Bernhard; Wilhelm, Mathias: Prosit-TMT: Deep Learning Boosts Identification of TMT-Labeled Peptides. Analytical Chemistry, 2022 mehr…
  • Giansanti, Piero; Samaras, Patroklos; Bian, Yangyang; Meng, Chen; Coluccio, Andrea; Frejno, Martin; Jakubowsky, Hannah; Dobiasch, Sophie; Hazarika, Rashmi R.; Rechenberger, Julia; Calzada-Wack, Julia; Krumm, Johannes; Mueller, Sebastian; Lee, Chien-Yun; Wimberger, Nicole; Lautenbacher, Ludwig; Hassan, Zonera; Chang, Yun-Chien; Falcomatà, Chiara; Bayer, Florian P.; Bärthel, Stefanie; Schmidt, Tobias; Rad, Roland; Combs, Stephanie E.; The, Matthew; Johannes, Frank; Saur, Dieter; de Angelis, Martin Hrabe; Wilhelm, Mathias; Schneider, Günter; Kuster, Bernhard: Mass spectrometry-based draft of the mouse proteome. Nature Methods, 2022 mehr…
  • Glas, Carina; Naydenova, Eli; Lechner, Severin; Wössner, Nathalie; Yang, Liu; Dietschreit, Johannes C.B.; Sun, Hongyan; Jung, Manfred; Kuster, Bernhard; Ochsenfeld, Christian; Bracher, Franz: Development of hetero-triaryls as a new chemotype for subtype-selective and potent Sirt5 inhibition. European Journal of Medicinal Chemistry 240, 2022, 114594 mehr…
  • Haange, Sven-Bastiaan; Till, Andreas; Bergh, Per-Olof; Fauler, Günter; Gigl, Michael; Löfgren-Sandblom, Anita; Schaap, Frank G.; Clavel, Thomas; Trautwein, Christian; Fenske, Wiebke; Kleigrewe, Karin; Marschall, Hanns-Ulrich; Olde Damink, Steven W. M.; Moustafa, Tarek; von Bergen, Martin; Rolle-Kampczyk, Ulrike: Ring Trial on Quantitative Assessment of Bile Acids Reveals a Method- and Analyte-Specific Accuracy and Reproducibility. Metabolites 12 (7), 2022, 583 mehr…
  • Heddes, Marjolein; Altaha, Baraa; Niu, Yunhui; Reitmeier, Sandra; Kleigrewe, Karin; Haller, Dirk; Kiessling, Silke: The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis. Nature Communications 13 (1), 2022 mehr…
  • Kleigrewe, Karin; Haack, Martina; Baudin, Martine; Ménabréaz, Thomas; Crovadore, Julien; Masri, Mahmoud; Beyrer, Michael; Andlauer, Wilfried; Lefort, François; Dawid, Corinna; Brück, Thomas B.; Brück, Wolfram M.: Dietary Modulation of the Human Gut Microbiota and Metabolome with Flaxseed Preparations. International Journal of Molecular Sciences 23 (18), 2022, 10473 mehr…
  • Kreitmeier, Michaela; Ardern, Zachary; Abele, Miriam; Ludwig, Christina; Scherer, Siegfried; Neuhaus, Klaus: Spotlight on alternative frame coding: Two long overlapping genes in Pseudomonas aeruginosa are translated and under purifying selection. iScience 25 (2), 2022, 103844 mehr…
  • Krumm, Johannes; Sekine, Keisuke; Samaras, Patroklos; Brazovskaja, Agnieska; Breunig, Markus; Yasui, Ryota; Kleger, Alexander; Taniguchi, Hideki; Wilhelm, Mathias; Treutlein, Barbara; Camp, J. Gray; Kuster, Bernhard: High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development. Cell Reports 38 (13), 2022, 110604 mehr…
  • Ku, Xin; Wang, Jinghan; Li, Haikuo; Meng, Chen; Yu, Fang; Yu, Wenjuan; Li, Zhongqi; Zhou, Ziqi; Zhang, Can; Hua, Ying; Yan, Wei; Jin, Jie: Proteomic Portrait of Human Lymphoma Reveals Protein Molecular Fingerprint of Disease Specific Subtypes and Progression. Phenomics 3 (2), 2022, 148-166 mehr…
  • Lechner, Severin; Malgapo, Martin Ian P.; Grätz, Christian; Steimbach, Raphael R.; Baron, Agnes; Rüther, Patrick; Nadal, Simon; Stumpf, Carmen; Loos, Christina; Ku, Xin; Prokofeva, Polina; Lautenbacher, Ludwig; Heimburg, Tino; Würf, Vivian; Meng, Chen; Wilhelm, Mathias; Sippl, Wolfgang; Kleigrewe, Karin; Pauling, Josch K.; Kramer, Karl; Miller, Aubry K.; Pfaffl, Michael W.; Linder, Maurine E.; Kuster, Bernhard; Médard, Guillaume: Target deconvolution of HDAC pharmacopoeia reveals MBLAC2 as common off-target. Nature Chemical Biology, 2022 mehr…
  • Mergner, Julia; Kuster, Bernhard: Plant Proteome Dynamics. Annual Review of Plant Biology 73 (1), 2022, 67-92 mehr…
  • Müller-Eigner, Annika; Sanz-Moreno, Adrián; de-Diego, Irene; Venkatasubramani, Anuroop Venkateswaran; Langhammer, Martina; Gerlini, Raffaele; Rathkolb, Birgit; Aguilar-Pimentel, Antonio; Klein-Rodewald, Tanja; Calzada-Wack, Julia; Becker, Lore; Palma-Vera, Sergio; Gille, Benedikt; Forne, Ignasi; Imhof, Axel; Meng, Chen; Ludwig, Christina; Koch, Franziska; Heiker, John T.; Kuhla, Angela; Caton, Vanessa; Brenmoehl, Julia; Reyer, Henry; Schoen, Jennifer; Fuchs, Helmut; Gailus-Durner, Valerie; Hoeflich, Andreas; de Angelis, Martin Hrabe; Peleg, Shahaf: Dietary intervention improves health metrics and life expectancy of the genetically obese Titan mouse. Communications Biology 5 (1), 2022 mehr…
  • Oeckl, Josef; Janovska, Petra; Adamcova, Katerina; Bardova, Kristina; Brunner, Sarah; Dieckmann, Sebastian; Ecker, Josef; Fromme, Tobias; Funda, Jiri; Gantert, Thomas; Giansanti, Piero; Hidrobo, Maria Soledad; Kuda, Ondrej; Kuster, Bernhard; Li, Yongguo; Pohl, Radek; Schmitt, Sabine; Schweizer, Sabine; Zischka, Hans; Zouhar, Petr; Kopecky, Jan; Klingenspor, Martin: Loss of UCP1 function augments recruitment of futile lipid cycling for thermogenesis in murine brown fat. Molecular Metabolism, 2022, 101499 mehr…
  • Orben, Felix; Lankes, Katharina; Schneeweis, Christian; Hassan, Zonera; Jakubowsky, Hannah; Krauß, Lukas; Boniolo, Fabio; Schneider, Carolin; Schäfer, Arlett; Murr, Janine; Schlag, Christoph; Kong, Bo; Öllinger, Rupert; Wang, Chengdong; Beyer, Georg; Mahajan, Ujjwal M.; Xue, Yonggan; Mayerle, Julia; Schmid, Roland M.; Kuster, Bernhard; Rad, Roland; Braun, Christian J.; Wirth, Matthias; Reichert, Maximilian; Saur, Dieter; Schneider, Günter: Epigenetic drug screening defines a PRMT5 inhibitor–sensitive pancreatic cancer subtype. JCI Insight 7 (10), 2022 mehr…
  • Prokofeva, Polina; Höfer, Stefanie; Hornisch, Maximilian; Abele, Miriam; Kuster, Bernhard; Médard, Guillaume: Merits of Diazirine Photo-Immobilization for Target Profiling of Natural Products and Cofactors. ACS Chemical Biology 17 (11), 2022, 3100-3109 mehr…
  • Stegmann, Martin; Zecua‐Ramirez, Patricia; Ludwig, Christina; Lee, Ho‐Seok; Peterson, Brenda; Nimchuk, Zachary L; Belkhadir, Youssef; Hückelhoven, Ralph: RGI‐GOLVEN signaling promotes cell surface immune receptor abundance to regulate plant immunity. EMBO reports, 2022 mehr…
  • Stepan, Jens; Heinz, Daniel E.; Dethloff, Frederik; Bajaj, Thomas; Zellner, Andreas; Hafner, Kathrin; Wiechmann, Svenja; Mackert, Sarah; Mecdad, Yara; Rabenstein, Michael; Ebert, Tim; Martinelli, Silvia; Häusl, Alexander S.; Pöhlmann, Maximilian L.; Hermann, Anke; Ma, Xiao; Pavenstädt, Hermann; Schmidt, Mathias V.; Philipsen, Alexandra; Turck, Chris W.; Deussing, Jan M.; Kuster, Bernhard; Wehr, Michael C.; Stein, Valentin; Kremerskothen, Joachim; Wotjak, Carsten T.; Gassen, Nils C.: Hippo-released WWC1 facilitates AMPA receptor regulatory complexes for hippocampal learning. Cell Reports 41 (10), 2022, 111766 mehr…
  • The, Matthew; Samaras, Patroklos; Kuster, Bernhard; Wilhelm, Mathias: Re-analysis of ProteomicsDB using an accurate, sensitive and scalable false discovery rate estimation approach for protein groups. Molecular &amp;Cellular Proteomics, 2022, 100437 mehr…
  • Valgepea, Kaspar; Talbo, Gert; Takemori, Nobuaki; Takemori, Ayako; Ludwig, Christina; Mahamkali, Vishnuvardhan; Mueller, Alexander P.; Tappel, Ryan; Köpke, Michael; Simpson, Séan Dennis; Nielsen, Lars Keld; Marcellin, Esteban: Absolute Proteome Quantification in the Gas-Fermenting Acetogen <i>Clostridium autoethanogenum</i>. mSystems, 2022 mehr…
  • Weiß, Lukas; Gaelings, Lana; Reiner, Tina; Mergner, Julia; Kuster, Bernhard; Fehér, Attila; Hensel, Götz; Gahrtz, Manfred; Kumlehn, Jochen; Engelhardt, Stefan; Hückelhoven, Ralph: Posttranslational modification of the RHO of plants protein RACB by phosphorylation and cross-kingdom conserved ubiquitination. PLOS ONE 17 (3), 2022, e0258924 mehr…
  • Zecha, Jana; Gabriel, Wassim; Spallek, Ria; Chang, Yun-Chien; Mergner, Julia; Wilhelm, Mathias; Bassermann, Florian; Kuster, Bernhard: Linking post-translational modifications and protein turnover by site-resolved protein turnover profiling. Nature Communications 13 (1), 2022 mehr…

2021

  • Alfaro, Javier Antonio; Bohländer, Peggy; Dai, Mingjie; Filius, Mike; Howard, Cecil J.; van Kooten, Xander F.; Ohayon, Shilo; Pomorski, Adam; Schmid, Sonja; Aksimentiev, Aleksei; Anslyn, Eric V.; Bedran, Georges; Cao, Chan; Chinappi, Mauro; Coyaud, Etienne; Dekker, Cees; Dittmar, Gunnar; Drachman, Nicholas; Eelkema, Rienk; Goodlett, David; Hentz, Sébastien; Kalathiya, Umesh; Kelleher, Neil L.; Kelly, Ryan T.; Kelman, Zvi; Kim, Sung Hyun; Kuster, Bernhard; Rodriguez-Larrea, David; Lindsay, Stuart; Maglia, Giovanni; Marcotte, Edward M.; Marino, John P.; Masselon, Christophe; Mayer, Michael; Samaras, Patroklos; Sarthak, Kumar; Sepiashvili, Lusia; Stein, Derek; Wanunu, Meni; Wilhelm, Mathias; Yin, Peng; Meller, Amit; Joo, Chirlmin: The emerging landscape of single-molecule protein sequencing technologies. Nature Methods 18 (6), 2021, 604-617 mehr…
  • Allihn, Patrick W. A.; Hackl, Mathias W.; Ludwig, Christina; Hacker, Stephan M.; Sieber, Stephan A.: A tailored phosphoaspartate probe unravels CprR as a response regulator in Pseudomonas aeruginosa interkingdom signaling. Chemical Science 12 (13), 2021, 4763-4770 mehr…
  • Baasch, Sebastian; Giansanti, Piero; Kolter, Julia; Riedl, André; Forde, Aaron James; Runge, Solveig; Zenke, Simon; Elling, Roland; Halenius, Anne; Brabletz, Simone; Hengel, Hartmut; Kuster, Bernhard; Brabletz, Thomas; Cicin-Sain, Luka; Arens, Ramon; Vlachos, Andreas; Rohr, Jan Christopher; Stemmler, Marc Philippe; Kopf, Manfred; Ruzsics, Zsolt; Henneke, Philipp: Cytomegalovirus subverts macrophage identity. Cell, 2021 mehr…
  • Baumeister, Theresa; Ingermann, Jonas; Marcazzan, Sabrina; Fang, Hsin-Yu; Oellinger, Rupert; Rad, Roland; Engleitner, Thomas; Kleigrewe, Karin; Anand, Akanksha; Strangmann, Julia; Schmid, Roland M; Wang, Timothy C; Quante, Michael: Anti-inflammatory chemoprevention attenuates the phenotype in a mouse model of esophageal adenocarcinoma. Carcinogenesis, 2021 mehr…
  • Baur, Sebastian; Frank, Oliver; Hausladen, Hans; Hückelhoven, Ralph; Hofmann, Thomas; Eisenreich, Wolfgang; Dawid, Corinna: Biosynthesis of α-solanine and α-chaconine in potato leaves (Solanum tuberosum L.) – A 13CO2 study. Food Chemistry 365, 2021, 130461 mehr…
  • Bian, Yangyang; Bayer, Florian P.; Chang, Yun-Chien; Meng, Chen; Hoefer, Stefanie; Deng, Nan; Zheng, Runsheng; Boychenko, Oleksandr; Kuster, Bernhard: Robust Microflow LC-MS/MS for Proteome Analysis: 38 000 Runs and Counting. Analytical Chemistry, 2021 mehr…
  • Bian, Yangyang; The, Matthew; Giansanti, Piero; Mergner, Julia; Zheng, Runsheng; Wilhelm, Mathias; Boychenko, Alexander; Kuster, Bernhard: Identification of 7 000–9 000 Proteins from Cell Lines and Tissues by Single-Shot Microflow LC–MS/MS. Analytical Chemistry, 2021 mehr…
  • Breunig, Markus; Merkle, Jessica; Wagner, Martin; Melzer, Michael K.; Barth, Thomas F.E.; Engleitner, Thomas; Krumm, Johannes; Wiedenmann, Sandra; Cohrs, Christian M.; Perkhofer, Lukas; Jain, Gaurav; Krüger, Jana; Hermann, Patrick C.; Schmid, Maximilian; Madácsy, Tamara; Varga, Árpád; Griger, Joscha; Azoitei, Ninel; Müller, Martin; Wessely, Oliver; Robey, Pamela G.; Heller, Sandra; Dantes, Zahra; Reichert, Maximilian; Günes, Cagatay; Bolenz, Christian; Kuhn, Florian; Maléth, József; Speier, Stephan; Liebau, Stefan; Sipos, Bence; Kuster, Bernhard; Seufferlein, Thomas; Rad, Roland; Meier, Matthias; Hohwieler, Meike; Kleger, Alexander: Modeling plasticity and dysplasia of pancreatic ductal organoids derived from human pluripotent stem cells. Cell Stem Cell, 2021 mehr…
  • Chauve, Laetitia; Hodge, Francesca; Murdoch, Sharlene; Masoudzadeh, Fatemeh; Mann, Harry-Jack; Lopez-Clavijo, Andrea F.; Okkenhaug, Hanneke; West, Greg; Sousa, Bebiana C.; Segonds-Pichon, Anne; Li, Cheryl; Wingett, Steven W.; Kienberger, Hermine; Kleigrewe, Karin; de Bono, Mario; Wakelam, Michael J. O.; Casanueva, Olivia: Neuronal HSF-1 coordinates the propagation of fat desaturation across tissues to enable adaptation to high temperatures in C. elegans. PLOS Biology 19 (11), 2021, e3001431 mehr…
  • Dölle, Anja; Adhikari, Bikash; Krämer, Andreas; Weckesser, Janik; Berner, Nicola; Berger, Lena-Marie; Diebold, Mathias; Szewczyk, Magdalena M.; Barsyte-Lovejoy, Dalia; Arrowsmith, Cheryl H.; Gebel, Jakob; Löhr, Frank; Dötsch, Volker; Eilers, Martin; Heinzlmeir, Stephanie; Kuster, Bernhard; Sotriffer, Christoph; Wolf, Elmar; Knapp, Stefan: Design, Synthesis, and Evaluation of WD-Repeat-Containing Protein 5 (WDR5) Degraders. Journal of Medicinal Chemistry, 2021 mehr…
  • Eberl, Claudia; Weiss, Anna S.; Jochum, Lara M.; Durai Raj, Abilash Chakravarthy; Ring, Diana; Hussain, Saib; Herp, Simone; Meng, Chen; Kleigrewe, Karin; Gigl, Michael; Basic, Marijana; Stecher, Bärbel: E. coli enhance colonization resistance against Salmonella Typhimurium by competing for galactitol, a context-dependent limiting carbon source. Cell Host & Microbe, 2021 mehr…
  • Eckert, Stephan; Chang, Yun-Chien; Bayer, Florian P.; The, Matthew; Kuhn, Peer-Hendrik; Weichert, Wilko; Kuster, Bernhard: Evaluation of Disposable Trap Column nanoLC–FAIMS–MS/MS for the Proteomic Analysis of FFPE Tissue. Journal of Proteome Research, 2021 mehr…
  • Falgenhauer, Elisabeth; von Schönberg, Sophie; Meng, Chen; Mückl, Andrea; Vogele, Kilian; Emslander, Quirin; Ludwig, Christina; Simmel, Friedrich Christian: Evaluation of an E. coli cell extract prepared by lysozyme‐assisted sonication via gene expression, phage assembly and proteomics. ChemBioChem, 2021 mehr…
  • Förster, Nadja; Antoniadou, Kyriaki; Zander, Matthias; Baur, Sebastian; Mittermeier-Kleßinger, Verena Karolin; Dawid, Corinna; Ulrichs, Christian; Mewis, Inga: Chemoprofiling as Breeding Tool for Pharmaceutical Use of Salix. Frontiers in Plant Science 12, 2021 mehr…
  • Giannaki, Marina; Ludwig, Christina; Heermann, Stephan; Roussa, Eleni: Regulation of electrogenic Na + /HCO 3 − cotransporter 1 (NBCe1) function and its dependence on m‐TOR mediated phosphorylation of Ser 245. Journal of Cellular Physiology, 2021 mehr…
  • Gläser, Peter; Mittermeier-Kleßinger, Verena Karolin; Spaccasassi, Andrea; Hofmann, Thomas; Dawid, Corinna: Quantification and Bitter Taste Contribution of Lipids and Their Oxidation Products in Pea-Protein Isolates (Pisum sativum L.). Journal of Agricultural and Food Chemistry 69 (31), 2021, 8768-8776 mehr…
  • Holleufer, Andreas; Winther, Kasper Grønbjerg; Gad, Hans Henrik; Ai, Xianlong; Chen, Yuqiang; Li, Lihua; Wei, Ziming; Deng, Huimin; Liu, Jiyong; Frederiksen, Ninna Ahlmann; Simonsen, Bine; Andersen, Line Lykke; Kleigrewe, Karin; Dalskov, Louise; Pichlmair, Andreas; Cai, Hua; Imler, Jean-Luc; Hartmann, Rune: Two cGAS-like receptors induce antiviral immunity in Drosophila. Nature, 2021 mehr…
  • How, Chorng-Kuang; Li, Li-Hua; Chiu, Yu-Hui; Meng, Chen; Kao, Wei-Fong: Effects of 100-km ultramarathon on erythropoietin variation in runners with hepatitis B virus carrier. Chinese Journal of Physiology 64 (3), 2021, 125 mehr…
  • Inhuber, V.; Windisch, W.; Bächler, B.; Schuster, M.; Spiekers, H.; Ettle, T.: Effects of supplementing a CP-reduced diet with rumen-protected methionine on Fleckvieh bull fattening. Animal 15 (11), 2021, 100366 mehr…
  • Kellerer, Teresa; Kleigrewe, Karin; Brandl, Beate; Hofmann, Thomas; Hauner, Hans; Skurk, Thomas: Fatty Acid Esters of Hydroxy Fatty Acids (FAHFAs) Are Associated With Diet, BMI, and Age. Frontiers in Nutrition 8, 2021 mehr…
  • Kolbeck, Sandra; Abele, Miriam; Hilgarth, Maik; Vogel, Rudi F.: Comparative Proteomics Reveals the Anaerobic Lifestyle of Meat-Spoiling Pseudomonas Species. Frontiers in Microbiology 12, 2021 mehr…
  • Kolbeck, Sandra; Kienberger, Hermine; Kleigrewe, Karin; Hilgarth, Maik; Vogel, Rudi F.: Effect of high levels of CO2 and O2 on membrane fatty acid profile and membrane physiology of meat spoilage bacteria. European Food Research and Technology, 2021 mehr…
  • Lautenbacher, Ludwig; Samaras, Patroklos; Muller, Julian; Grafberger, Andreas; Shraideh, Marwin; Rank, Johannes; Fuchs, Simon T; Schmidt, Tobias K; The, Matthew; Dallago, Christian; Wittges, Holger; Rost, Burkhard; Krcmar, Helmut; Kuster, Bernhard; Wilhelm, Mathias: ProteomicsDB: toward a FAIR open-source resource for life-science research. Nucleic Acids Research, 2021 mehr…
  • Lier, Svenja; Sellmer, Andreas; Orben, Felix; Heinzlmeir, Stephanie; Krauß, Lukas; Schneeweis, Christian; Hassan, Zonera; Schneider, Carolin; Schäfer, Arlette; Pongratz, Herwig; Engleitner, Thomas; Öllinger, Rupert; Kuisl, Anna; Bassermann, Florian; Schlag, Christoph; Kong, Bo; Dove, Stefan; Kuster, Bernhard; Rad, Roland; Reichert, Maximilian; Wirth, Matthias; Saur, Dieter; Mahboobi, Siavosh; Schneider, Günter: A novel Cereblon E3 ligase modulator with antitumor activity in gastrointestinal cancer. Bioorganic Chemistry, 2021, 105505 mehr…
  • Liu, Nian; Gujrati, Vipul; Malekzadeh-Najafabadi, Jaber; Werner, Juan Pablo Fuenzalida; Klemm, Uwe; Tang, Longguang; Chen, Zhenyue; Prakash, Jaya; Huang, Yuanhui; Stiel, Andre; Mettenleiter, Gabriele; Aichler, Michaela; Blutke, Andreas; Walch, Axel; Kleigrewe, Karin; Razansky, Daniel; Sattler, Michael; Ntziachristos, Vasilis: Croconaine-based nanoparticles enable efficient optoacoustic imaging of murine brain tumors. Photoacoustics, 2021, 100263 mehr…
  • Liu, Nian; O'Connor, Patrick; Gujrati, Vipul; Gorpas, Dimitris; Glasl, Sarah; Blutke, Andreas; Walch, Axel; Kleigrewe, Karin; Sattler, Michael; Plettenburg, Oliver; Ntziachristos, Vasilis: Facile Synthesis of a Croconaine‐Based Nanoformulation for Optoacoustic Imaging and Photothermal Therapy. Advanced Healthcare Materials, 2021, 2002115 mehr…
  • Lê Cao, Kim-Anh; Abadi, Al J.; Davis-Marcisak, Emily F.; Hsu, Lauren; Arora, Arshi; Coullomb, Alexis; Deshpande, Atul; Feng, Yuzhou; Jeganathan, Pratheepa; Loth, Melanie; Meng, Chen; Mu, Wancen; Pancaldi, Vera; Sankaran, Kris; Singh, Amrit; Sodicoff, Joshua S.; Stein-O’Brien, Genevieve L.; Subramanian, Ayshwarya; Welch, Joshua D.; You, Yue; Argelaguet, Ricard; Carey, Vincent J.; Dries, Ruben; Greene, Casey S.; Holmes, Susan; Love, Michael I.; Ritchie, Matthew E.; Yuan, Guo-Cheng; Culhane, Aedin C.; Fertig, Elana: Community-wide hackathons to identify central themes in single-cell multi-omics. Genome Biology 22 (1), 2021 mehr…
  • Martinelli, Silvia; Anderzhanova, Elmira A.; Bajaj, Thomas; Wiechmann, Svenja; Dethloff, Frederik; Weckmann, Katja; Heinz, Daniel E.; Ebert, Tim; Hartmann, Jakob; Geiger, Thomas M.; Döngi, Michael; Hafner, Kathrin; Pöhlmann, Max L.; Jollans, Lee; Philipsen, Alexandra; Schmidt, Susanne V.; Schmidt, Ulrike; Maccarrone, Giuseppina; Stein, Valentin; Hausch, Felix; Turck, Christoph W.; Schmidt, Mathias V.; Gellner, Anne-Kathrin; Kuster, Bernhard; Gassen, Nils C.: Stress-primed secretory autophagy promotes extracellular BDNF maturation by enhancing MMP9 secretion. Nature Communications 12 (1), 2021 mehr…
  • Mittermeier-Kleßinger, Verena Karolin; Hofmann, Thomas; Dawid, Corinna: Mitigating Off-Flavors of Plant-Based Proteins. Journal of Agricultural and Food Chemistry, 2021 mehr…
  • Mori, Matteo; Zhang, Zhongge; Banaei‐Esfahani, Amir; Lalanne, Jean‐Benoît; Okano, Hiroyuki; Collins, Ben C; Schmidt, Alexander; Schubert, Olga T; Lee, Deok‐Sun; Li, Gene‐Wei; Aebersold, Ruedi; Hwa, Terence; Ludwig, Christina: From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions. Molecular Systems Biology 17 (5), 2021 mehr…
  • Pal, Jagriti; Becker, Andrea C.; Dhamija, Sonam; Seiler, Jeanette; Abdelkarim, Mahmoud; Sharma, Yogita; Behr, Jürgen; Meng, Chen; Ludwig, Christina; Kuster, Bernhard; Diederichs, Sven: Systematic analysis of migration factors by MigExpress identifies essential cell migration control genes in non‐small cell lung cancer. Molecular Oncology, 2021 mehr…
  • Phan, Tamara; Maity, Pallab; Ludwig, Christina; Streit, Lisa; Michaelis, Jens; Tsesmelis, Miltiadis; Scharffetter-Kochanek, Karin; Iben, Sebastian: Nucleolar TFIIE plays a role in ribosomal biogenesis and performance. Nucleic Acids Research, 2021 mehr…
  • Philippi, Anne; Heller, Sandra; Costa, Ivan G.; Senée, Valérie; Breunig, Markus; Li, Zhijian; Kwon, Gino; Russell, Ronan; Illing, Anett; Lin, Qiong; Hohwieler, Meike; Degavre, Anne; Zalloua, Pierre; Liebau, Stefan; Schuster, Michael; Krumm, Johannes; Zhang, Xi; Geusz, Ryan; Benthuysen, Jacqueline R.; Wang, Allen; Chiou, Joshua; Gaulton, Kyle; Neubauer, Heike; Simon, Eric; Klein, Thomas; Wagner, Martin; Nair, Gopika; Besse, Céline; Dandine-Roulland, Claire; Olaso, Robert; Deleuze, Jean-François; Kuster, Bernhard; Hebrok, Matthias; Seufferlein, Thomas; Sander, Maike; Boehm, Bernhard O.; Oswald, Franz; Nicolino, Marc; Julier, Cécile; Kleger, Alexander: Mutations and variants of ONECUT1 in diabetes. Nature Medicine, 2021 mehr…
  • Proaño-Vasco, Andrea; Baumeister, Theresa; Metwaly, Amira; Reitmeier, Sandra; Kleigrewe, Karin; Meng, Chen; Gigl, Michael; Engleitner, Thomas; Öllinger, Rupert; Rad, Roland; Steiger, Katja; Anand, Akanksha; Strangmann, Julia; Thimme, Robert; Schmid, Roland M.; Wang, Timothy C.; Quante, Michael: High-Fructose Diet Alters Intestinal Microbial Profile and Correlates with Early Tumorigenesis in a Mouse Model of Barrett’s Esophagus. Microorganisms 9 (12), 2021, 2432 mehr…
  • Qiang, Mingyue; Khalid, Fatima; Phan, Tamara; Ludwig, Christina; Scharffetter-Kochanek, Karin; Iben, Sebastian: Cockayne Syndrome-Associated CSA and CSB Mutations Impair Ribosome Biogenesis, Ribosomal Protein Stability, and Global Protein Folding. Cells 10 (7), 2021, 1616 mehr…
  • Schiffer, Carolin J.; Abele, Miriam; Ehrmann, Matthias A.; Vogel, Rudi F.: Bap-Independent Biofilm Formation in Staphylococcus xylosus. Microorganisms 9 (12), 2021, 2610 mehr…
  • Schmid, Christian; Mittermeier-Kleßinger, Verena; Tabea Peters, Verena Christina; Berger, Florian; Kramler, Marlene; Heuberger, Heidi; Rinder, Rudolf; Hofmann, Thomas; Gutjahr, Caroline; Dawid, Corinna: Quantitative Mapping of Flavor and Pharmacologically Active Compounds in European Licorice Roots (Glycyrrhiza glabra L.) in Response to Growth Conditions and Arbuscular Mycorrhiza Symbiosis. Journal of Agricultural and Food Chemistry 69 (44), 2021, 13173-13189 mehr…
  • Schmidt, Tobias; Samaras, Patroklos; Dorfer, Viktoria; Panse, Christian; Kockmann, Tobias; Bichmann, Leon; van Puyvelde, Bart; Perez-Riverol, Yasset; Deutsch, Eric W.; Kuster, Bernhard; Wilhelm, Mathias: Universal Spectrum Explorer: A Standalone (Web-)Application for Cross-Resource Spectrum Comparison. Journal of Proteome Research, 2021 mehr…
  • Stenton, Sarah L.; Sheremet, Natalia L.; Catarino, Claudia B.; Andreeva, Natalia; Assouline, Zahra; Barboni, Piero; Barel, Ortal; Berutti, Riccardo; Bychkov, Igor O.; Caporali, Leonardo; Capristo, Mariantonietta; Carbonelli, Michele; Cascavilla, Maria Lucia; Charbel Issa, Peter; Freisinger, Peter; Gerber, Sylvie; Ghezzi, Daniele; Graf, Elisabeth; Heidler, Juliana; Hempel, Maja; Heon, Elise; Itkis, Yulia S.; Javasky, Elisheva; Kaplan, Josseline; Kopajtich, Robert; Kornblum, Cornelia; Kovacs-Nagy, Reka; Krylova, Tatiana; Kunz, Wolfram S.; La Morgia, Chiara; Lamperti, Costanza; Ludwig, Christina; Malacarne, Pedro F.; Maresca, Alessandra; Mayr, Johannes A.; Meisterknecht, Jana; Nevinitsyna, Tatiana; Palombo, Flavia; Pode-Shakked, Ben; Shmelkova, Maria S.; Strom, Tim M.; Tagliavini, Francesca; Tzadok, Michal; van der Ven, Amelie T.; Vignal-Clermont, Catherine; Wagner, Matias; Zakharova, Ekaterina; Zhorzholadze, Nino; Rozet, Jen-Michel; Carelli, Valerio et al.: Impaired complex I repair causes recessive Leber’s hereditary optic neuropathy. Journal of Clinical Investigation, 2021 mehr…
  • Weiss, Anna S.; Burrichter, Anna G.; Durai Raj, Abilash Chakravarthy; von Strempel, Alexandra; Meng, Chen; Kleigrewe, Karin; Münch, Philipp C.; Rössler, Luis; Huber, Claudia; Eisenreich, Wolfgang; Jochum, Lara M.; Göing, Stephanie; Jung, Kirsten; Lincetto, Chiara; Hübner, Johannes; Marinos, Georgios; Zimmermann, Johannes; Kaleta, Christoph; Sanchez, Alvaro; Stecher, Bärbel: In vitro interaction network of a synthetic gut bacterial community. The ISME Journal, 2021 mehr…
  • Wiechmann, Svenja; Ruprecht, Benjamin; Siekmann, Theresa; Zheng, Runsheng; Frejno, Martin; Kunold, Elena; Bajaj, Thomas; Zolg, Daniel P.; Sieber, Stephan A.; Gassen, Nils C.; Kuster, Bernhard: Chemical Phosphoproteomics Sheds New Light on the Targets and Modes of Action of AKT Inhibitors. ACS Chemical Biology, 2021 mehr…
  • Wilhelm, Mathias; Zolg, Daniel P.; Graber, Michael; Gessulat, Siegfried; Schmidt, Tobias; Schnatbaum, Karsten; Schwencke-Westphal, Celina; Seifert, Philipp; de Andrade Krätzig, Niklas; Zerweck, Johannes; Knaute, Tobias; Bräunlein, Eva; Samaras, Patroklos; Lautenbacher, Ludwig; Klaeger, Susan; Wenschuh, Holger; Rad, Roland; Delanghe, Bernard; Huhmer, Andreas; Carr, Steven A.; Clauser, Karl R.; Krackhardt, Angela M.; Reimer, Ulf; Kuster, Bernhard: Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics. Nature Communications 12 (1), 2021 mehr…
  • Wilhelm, Mathias; Zolg, Daniel P.; Graber, Michael; Gessulat, Siegfried; Schmidt, Tobias; Schnatbaum, Karsten; Schwencke-Westphal, Celina; Seifert, Philipp; de Andrade Krätzig, Niklas; Zerweck, Johannes; Knaute, Tobias; Bräunlein, Eva; Samaras, Patroklos; Lautenbacher, Ludwig; Klaeger, Susan; Wenschuh, Holger; Rad, Roland; Delanghe, Bernard; Huhmer, Andreas; Carr, Steven A.; Clauser, Karl R.; Krackhardt, Angela M.; Reimer, Ulf; Kuster, Bernhard: Author Correction: Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics. Nature Communications 12 (1), 2021 mehr…
  • Zhang, Xiang; Schuhmachers, Patrick; Mourão, André; Giansanti, Piero; Murer, Anita; Thumann, Sybille; Kuklik‐Roos, Cornelia; Beer, Sophie; Hauck, Stefanie M; Hammerschmidt, Wolfgang; Küppers, Ralf; Kuster, Bernhard; Raab, Monika; Strebhardt, Klaus; Sattler, Michael; Münz, Christian; Kempkes, Bettina: PLK1‐dependent phosphorylation restrains EBNA2 activity and lymphomagenesis in EBV‐infected mice. EMBO reports, 2021 mehr…
  • Zhao, Yamin; Schoeps, Benjamin; Yao, Dianbo; Zhang, Zhiheng; Schuck, Kathleen; Tissen, Vivien; Jäger, Carsten; Schlitter, Anna Melissa; van der Kammen, Rob; Ludwig, Christina; D’Haese, Jan G.; Raulefs, Susanne; Maeritz, Nadja; Shen, Shanshan; Zou, Xiaoping; Krüger, Achim; Kleeff, Jörg; Michalski, Christoph W.; Friess, Helmut; Innocenti, Metello; Kong, Bo: mTORC1 and mTORC2 Converge on the Arp2/3 Complex to Promote KrasG12D-Induced Acinar-to-Ductal Metaplasia and Early Pancreatic Carcinogenesis. Gastroenterology 160 (5), 2021, 1755-1770.e17 mehr…

2020

  • Adhikari, Bikash; Bozilovic, Jelena; Diebold, Mathias; Schwarz, Jessica Denise; Hofstetter, Julia; Schröder, Martin; Wanior, Marek; Narain, Ashwin; Vogt, Markus; Dudvarski Stankovic, Nevenka; Baluapuri, Apoorva; Schönemann, Lars; Eing, Lorenz; Bhandare, Pranjali; Kuster, Bernhard; Schlosser, Andreas; Heinzlmeir, Stephanie; Sotriffer, Christoph; Knapp, Stefan; Wolf, Elmar: PROTAC-mediated degradation reveals a non-catalytic function of AURORA-A kinase. Nature Chemical Biology, 2020 mehr…
  • Bararia, Deepak; Hildebrand, Johannes A.; Stolz, Sebastian; Haebe, Sarah; Alig, Stefan; Trevisani, Christopher P.; Osorio-Barrios, Francisco; Bartoschek, Michael D.; Mentz, Michael; Pastore, Alessandro; Gaitzsch, Erik; Heide, Michael; Jurinovic, Vindi; Rautter, Katharina; Gunawardana, Jay; Sabdia, Muhammed B.; Szczepanowski, Monika; Richter, Julia; Klapper, Wolfram; Louissaint, Abner, Jr.; Ludwig, Christina; Bultmann, Sebastian; Leonhardt, Heinrich; Eustermann, Sebastian; Hopfner, Karl-Peter; Hiddemann, Wolfgang; von Bergwelt-Baildon, Michael; Steidl, Christian; Kridel, Robert; Tobin, Joshua W.D.; Gandhi, Maher K.; Weinstock, David M.; Schmidt-Supprian, Marc; Sárosi, Menyhárt B.; Rudelius, Martina; Passerini, Verena; Mautner, Josef; Weigert, Oliver: Cathepsin S Alterations Induce a Tumor-Promoting Immune Microenvironment in Follicular Lymphoma. Cell Reports, 2020, 107522 mehr…
  • Bechtner, Julia; Ludwig, Christina; Kiening, Michael; Jakob, Frank; Vogel, Rudi F.: Living the Sweet Life: How Liquorilactobacillus hordei TMW 1.1822 Changes Its Behavior in the Presence of Sucrose in Comparison to Glucose. Foods 9 (9), 2020, 1150 mehr…
  • Bian, Yangyang; Zheng, Runsheng; Bayer, Florian P.; Wong, Cassandra; Chang, Yun-Chien; Meng, Chen; Zolg, Daniel P.; Reinecke, Maria; Zecha, Jana; Wiechmann, Svenja; Heinzlmeir, Stephanie; Scherr, Johannes; Hemmer, Bernhard; Baynham, Mike; Gingras, Anne-Claude; Boychenko, Oleksandr; Kuster, Bernhard: Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC–MS/MS. Nature Communications 11 (1), 2020 mehr…
  • Chen, Wei; Meng, Chen; Ji, Jing; Li, Mai-He; Zhang, Xiaoman; Wu, Yanyan; Xie, Tiantian; Du, Changjian; Sun, Jiacheng; Jiang, Zeping; Shi, Shengqing: Exogenous GABA promotes adaptation and growth by altering the carbon and nitrogen metabolic flux in poplar seedlings under low nitrogen conditions. Tree Physiology, 2020 mehr…
  • Cheung, Tommy K.; Lee, Chien-Yun; Bayer, Florian P.; McCoy, Atticus; Kuster, Bernhard; Rose, Christopher M.: Defining the carrier proteome limit for single-cell proteomics. Nature Methods, 2020 mehr…
  • Dietinger, Vanessa; García de Durango, Cira R.; Wiechmann, Svenja; Boos, Sophie L.; Michl, Marlies; Neumann, Jens; Hermeking, Heiko; Kuster, Bernhard; Jung, Peter: Wnt-driven LARGE2 mediates laminin-adhesive O-glycosylation in human colonic epithelial cells and colorectal cancer. Cell Communication and Signaling 18 (1), 2020 mehr…
  • Duggan, Tara; Dawid, Corinna; Baur, Sebastian; Hofmann, Thomas: Characterization of bitter and astringent off-taste compounds in potato fibres. Journal of Agricultural and Food Chemistry, 2020 mehr…
  • Edelmann, Matthias; Dawid, Corinna; Hochreiter, Katharina; Ralla, Theo; Stark, Timo D.; Salminen, Hanna; Weiss, Jochen; Hofmann, Thomas: Molecularization of Foam-Active Saponins from Sugar Beet Side Streams (Beta vulgaris ssp. vulgaris var. altissima). Journal of Agricultural and Food Chemistry, 2020 mehr…
  • Edelmann, Matthias; Dawid, Corinna; Ralla, Theo; Stark, Timo D.; Salminen, Hanna; Weiss, Jochen; Hofmann, Thomas: Fast and Sensitive LC–MS/MS Method for the Quantitation of Saponins in Various Sugar Beet Materials. Journal of Agricultural and Food Chemistry 68 (50), 2020, 15027-15035 mehr…
  • Frejno, Martin; Meng, Chen; Ruprecht, Benjamin; Oellerich, Thomas; Scheich, Sebastian; Kleigrewe, Karin; Drecoll, Enken; Samaras, Patroklos; Hogrebe, Alexander; Helm, Dominic; Mergner, Julia; Zecha, Jana; Heinzlmeir, Stephanie; Wilhelm, Mathias; Dorn, Julia; Kvasnicka, Hans-Michael; Serve, Hubert; Weichert, Wilko; Kuster, Bernhard: Proteome activity landscapes of tumor cell lines determine drug responses. Nature Communications 11 (1), 2020 mehr…
  • Gläser, Peter; Dawid, Corinna; Meister, Stefanie; Bader-Mittermaier, Stephanie; Schott, Michael; Eisner, Peter; Hofmann, Thomas: Molecularization of Bitter Off-Taste Compounds in Pea-Protein Isolates (Pisum sativum L.). Journal of Agricultural and Food Chemistry, 2020 mehr…
  • Haubold, S.; Kröger-Koch, C.; Starke, A.; Tuchscherer, A.; Tröscher, A.; Kienberger, H.; Rychlik, M.; Bernabucci, U.; Trevisi, E.; Hammon, H.M.: Effects of abomasal infusion of essential fatty acids and conjugated linoleic acid on performance and fatty acid, antioxidative, and inflammatory status in dairy cows. Journal of Dairy Science 103 (1), 2020, 972-991 mehr…
  • Hoermann, Bernhard; Kokot, Thomas; Helm, Dominic; Heinzlmeir, Stephanie; Chojnacki, Jeremy E.; Schubert, Thomas; Ludwig, Christina; Berteotti, Anna; Kurzawa, Nils; Kuster, Bernhard; Savitski, Mikhail M.; Köhn, Maja: Dissecting the sequence determinants for dephosphorylation by the catalytic subunits of phosphatases PP1 and PP2A. Nature Communications 11 (1), 2020 mehr…
  • Janßen, Dorothee; Dworschak, Lena; Ludwig, Christina; Ehrmann, Matthias A.; Vogel, Rudi F.: Interspecies assertiveness of Lactobacillus curvatus and Lactobacillus sakei in sausage fermentations. International Journal of Food Microbiology 331, 2020, 108689 mehr…
  • Kolbeck, Sandra; Ludwig, Christina; Meng, Chen; Hilgarth, Maik; Vogel, Rudi F.: Comparative Proteomics of Meat Spoilage Bacteria Predicts Drivers for Their Coexistence on Modified Atmosphere Packaged Meat. Frontiers in Microbiology 11, 2020 mehr…
  • Ku, Xin; Sun, Qiangling; Zhu, Lei; Gu, Zhitao; Han, Yuchen; Xu, Ning; Meng, Chen; Yang, Xiaohua; Yan, Wei; Fang, Wentao: Deciphering tissue‐based proteome signatures revealed novel subtyping and prognostic markers for thymic epithelial tumors. Molecular Oncology, 2020 mehr…
  • Lexhaller, Barbara; Ludwig, Christina; Scherf, Katharina Anne: Identification of Isopeptides Between Human Tissue Transglutaminase and Wheat, Rye, and Barley Gluten Peptides. Scientific Reports 10 (1), 2020 mehr…
  • Li, Hui; Mercer, Ryan; Behr, Jürgen; Heinzlmeir, Stephanie; McMullen, Lynn M.; Vogel, Rudi F.; Gänzle, Michael G.: Heat and Pressure Resistance in Escherichia coli Relates to Protein Folding and Aggregation. Frontiers in Microbiology 11, 2020 mehr…
  • Liermann, Wendy; Viergutz, Torsten; Uken, Katrin Lena; Vogel, Laura; Gnott, Martina; Dannenberger, Dirk; Tuchscherer, Armin; Kienberger, Hermine; Rychlik, Michael; Tröscher, Arnulf; Hammon, Harald Michael: Influences of Maternal Conjugated Linoleic Acid and Essential Fatty Acid Supply During Late Pregnancy and Early Lactation on T and B Cell Subsets in Mesenteric Lymph Nodes and the Small Intestine of Neonatal Calves. Frontiers in Veterinary Science 7, 2020 mehr…
  • Luca, Simon Vlad; Roehrer, Simon; Kleigrewe, Karin; Minceva, Mirjana: Approach for simultaneous cannabidiol isolation and pesticide removal from hemp extracts with liquid-liquid chromatography. Industrial Crops and Products 155, 2020, 112726 mehr…
  • Mergner, Julia; Frejno, Martin; List, Markus; Papacek, Michael; Chen, Xia; Chaudhary, Ajeet; Samaras, Patroklos; Richter, Sandra; Shikata, Hiromasa; Messerer, Maxim; Lang, Daniel; Altmann, Stefan; Cyprys, Philipp; Zolg, Daniel P.; Mathieson, Toby; Bantscheff, Marcus; Hazarika, Rashmi R.; Schmidt, Tobias; Dawid, Corinna; Dunkel, Andreas; Hofmann, Thomas; Sprunck, Stefanie; Falter-Braun, Pascal; Johannes, Frank; Mayer, Klaus F. X.; Jürgens, Gerd; Wilhelm, Mathias; Baumbach, Jan; Grill, Erwin; Schneitz, Kay; Schwechheimer, Claus; Kuster, Bernhard: Mass-spectrometry-based draft of the Arabidopsis proteome. Nature, 2020 mehr…
  • Mergner, Julia; Frejno, Martin; Messerer, Maxim; Lang, Daniel; Samaras, Patroklos; Wilhelm, Mathias; Mayer, Klaus F. X.; Schwechheimer, Claus; Kuster, Bernhard: Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis. Scientific Data 7 (1), 2020 mehr…
  • Montenegro, Raquel Carvalho; Howarth, Alison; Ceroni, Alessandro; Fedele, Vita; Farran, Batoul; Mesquita, Felipe Pantoja; Frejno, Martin; Berger, Benedict-Tilman; Heinzlmeir, Stephanie; Sailem, Heba Z.; Tesch, Roberta; Ebner, Daniel; Knapp, Stefan; Burbano, Rommel; Kuster, Bernhard; Müller, Susanne: Identification of molecular targets for the targeted treatment of gastric cancer using dasatinib. Oncotarget 11 (5), 2020 mehr…
  • Nelson, Chase W; Ardern, Zachary; Goldberg, Tony L; Meng, Chen; Kuo, Chen-Hao; Ludwig, Christina; Kolokotronis, Sergios-Orestis; Wei, Xinzhu: Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic. eLife 9, 2020 mehr…
  • Romer, Emilia; Chebib, Soraya; Bergmann, Karl-Christian; Plate, Katrin; Becker, Sylvia; Ludwig, Christina; Meng, Chen; Fischer, Thilo; Dierend, Werner; Schwab, Wilfried: Tiered approach for the identification of Mal d 1 reduced, well tolerated apple genotypes. Scientific Reports 10 (1), 2020 mehr…
  • Schulz, Annika; Lang, Roman; Behr, Jürgen; Hertel, Susann; Reich, Marco; Kümmerer, Klaus; Hannig, Matthias; Hannig, Christian; Hofmann, Thomas: Targeted metabolomics of pellicle and saliva in children with different caries activity. Scientific Reports 10 (1), 2020 mehr…
  • Searle, Brian C.; Swearingen, Kristian E.; Barnes, Christopher A.; Schmidt, Tobias; Gessulat, Siegfried; Küster, Bernhard; Wilhelm, Mathias: Generating high quality libraries for DIA MS with empirically corrected peptide predictions. Nature Communications 11 (1), 2020 mehr…
  • Vogel, L.; Gnott, M.; Kröger-Koch, C.; Dannenberger, D.; Tuchscherer, A.; Tröscher, A.; Kienberger, H.; Rychlik, M.; Starke, A.; Bachmann, L.; Hammon, H.M.: Effects of abomasal infusion of essential fatty acids together with conjugated linoleic acid in late and early lactation on performance, milk and body composition, and plasma metabolites in dairy cows. Journal of Dairy Science, 2020 mehr…
  • Wenning, Mareike; Breitenwieser, Franziska; Huptas, Christopher; Doll, Etienne; Bächler, Benedikt; Schulz, Annika; Dunkel, Andreas; Hofmann, Thomas; von Neubeck, Mario; Busse, Hans-Jürgen; Scherer, Siegfried: Brevilactibacter flavus gen. nov., sp. nov., a novel bacterium of the family Propionibacteriaceae isolated from raw milk and dairy products and reclassification of Propioniciclava sinopodophylli as Brevilactibacter sinopodophylli comb. nov. International Journal of Systematic and Evolutionary Microbiology, 2020 mehr…
  • Wiechmann, Svenja; Saupp, Elena; Schilling, Daniela; Heinzlmeir, Stephanie; Schneider, Günter; Schmid, Roland M.; Combs, Stephanie E.; Kuster, Bernhard; Dobiasch, Sophie: Radiosensitization by Kinase Inhibition Revealed by Phosphoproteomic Analysis of Pancreatic Cancer Cells. Molecular & Cellular Proteomics 19 (10), 2020, 1649-1663 mehr…
  • Zecha, Jana; Lee, Chien-Yun; Bayer, Florian P.; Meng, Chen; Grass, Vincent; Zerweck, Johannes; Schnatbaum, Karsten; Michler, Thomas; Pichlmair, Andreas; Ludwig, Christina; Kuster, Bernhard: Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing. Molecular & Cellular Proteomics, 2020, mcp.RA120.002164 mehr…
  • Zhao, Yamin; Schoeps, Benjamin; Yao, Dianbo; Zhang, Zhiheng; Schuck, Kathleen; Tissen, Vivien; Jäger, Carsten; Schlitter, Anna Melissa; van der Kammen, Rob; Ludwig, Christina; D’Haese, Jan G.; Raulefs, Susanne; Maeritz, Nadja; Shen, Shanshan; Zou, Xiaoping; Krüger, Achim; Kleeff, Jörg; Michalski, Christoph W.; Friess, Helmut; Innocenti, Metello; Kong, Bo: mTORC1 and mTORC2 converge on the Arp2/3 complex to promote KrasG12D-induced acinar-to-ductal metaplasia and early pancreatic carcinogenesis. Gastroenterology, 2020 mehr…

2019

  • Bechtner, Julia; Xu, Di; Behr, Jürgen; Ludwig, Christina; Vogel, Rudi F.: Proteomic Analysis of Lactobacillus nagelii in the Presence of Saccharomyces cerevisiae Isolated From Water Kefir and Comparison With Lactobacillus hordei. Frontiers in Microbiology 10, 2019 mehr…
  • Brehm, Laura; Jünger, Manon; Frank, Oliver; Hofmann, Thomas: Discovery of a Thiamine-Derived Taste Enhancer in Process Flavors. Journal of Agricultural and Food Chemistry, 2019 mehr…
  • Engelke, Stefanie W.; Daş, Gürbüz; Derno, Michael; Tuchscherer, Armin; Wimmers, Klaus; Rychlik, Michael; Kienberger, Hermine; Berg, Werner; Kuhla, Björn; Metges, Cornelia C.: Methane prediction based on individual or groups of milk fatty acids for dairy cows fed rations with or without linseed. Journal of Dairy Science 102 (2), 2019, 1788-1802 mehr…
  • Gessulat, Siegfried; Schmidt, Tobias; Zolg, Daniel Paul; Samaras, Patroklos; Schnatbaum, Karsten; Zerweck, Johannes; Knaute, Tobias; Rechenberger, Julia; Delanghe, Bernard; Huhmer, Andreas; Reimer, Ulf; Ehrlich, Hans-Christian; Aiche, Stephan; Kuster, Bernhard; Wilhelm, Mathias: Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning. Nature Methods 16 (6), 2019, 509-518 mehr…
  • Haubold, S.; Kröger-Koch, C.; Starke, A.; Tuchscherer, A.; Tröscher, A.; Kienberger, H.; Rychlik, M.; Bernabucci, U.; Trevisi, E.; Hammon, H.M.: Effects of abomasal infusion of essential fatty acids and conjugated linoleic acid on performance and fatty acid, antioxidative, and inflammatory status in dairy cows. Journal of Dairy Science, 2019 mehr…
  • Hofstetter, Christoph Konrad; Dunkel, Andreas; Hofmann, Thomas: Unified Flavor Quantitation: Toward High-Throughput Analysis of Key Food Odorants and Tastants by Means of Ultra-High-Performance Liquid Chromatography Tandem Mass Spectrometry. Journal of Agricultural and Food Chemistry 67 (31), 2019, 8599-8608 mehr…
  • Kalde, Monika; Elliott, Liam; Ravikumar, Raksha; Rybak, Katarzyna; Altmann, Melina; Klaeger, Susan; Wiese, Christian; Abele, Miriam; Al, Benjamin; Kalbfuß, Nils; Qi, Xingyun; Steiner, Alexander; Meng, Chen; Zheng, Huanquan; Kuster, Bernhard; Falter‐Braun, Pascal; Ludwig, Christina; Moore, Ian; Assaad, Farhah F.: Interactions between Transport Protein Particle ( TRAPP ) complexes and Rab GTP ases in Arabidopsisde Interactions between Transport Protein Particle (TRAPP) complexes and Rab GTPases in Arabidopsis. The Plant Journal, 2019 mehr…
  • Khakipoor, Shokoufeh; Giannaki, Marina; Theparambil, Shefeeq M.; Zecha, Jana; Küster, Bernhard; Heermann, Stephan; Deitmer, Joachim W.; Roussa, Eleni: Functional expression of electrogenic sodium bicarbonate cotransporter 1 (NBCe1) in mouse cortical astrocytes is dependent on S255‐257 and regulated by mTOR. Glia, 2019 mehr…
  • Kolbeck, Sandra; Behr, Jürgen; Vogel, Rudi. F.; Ludwig, Christina; Ehrmann, Matthias A.: Acid stress response of Staphylococcus xylosus elicits changes in the proteome and cellular membranede Acid stress response of Staphylococcus xylosus elicits changes in the proteome and cellular membrane. Journal of Applied Microbiology, 2019 mehr…
  • Lalaoui, Rym; Djukovic, Ana; Bakour, Sofiane; Sanz, Jaime; Gonzalez-Barbera, Eva M.; Salavert, Miguel; López-Hontangas, Jose Luis; Sanz, Miguel A.; Xavier, Karina B.; Kuster, Bernhard; Debrauwer, Laurent; Ubeda, Carles; Rolain, Jean-Marc: Detection of plasmid-mediated colistin resistance, mcr-1 gene, in Escherichia coli isolated from high-risk patients with acute leukemia in Spain. Journal of Infection and Chemotherapy, 2019 mehr…
  • Lengfelder, Isabella; Sava, Irina G.; Hansen, Jonathan J.; Kleigrewe, Karin; Herzog, Jeremy; Neuhaus, Klaus; Hofmann, Thomas; Sartor, R. Balfour; Haller, Dirk: Complex Bacterial Consortia Reprogram the Colitogenic Activity of Enterococcus faecalis in a Gnotobiotic Mouse Model of Chronic, Immune-Mediated Colitis. Frontiers in Immunology 10, 2019 mehr…
  • Lexhaller; Ludwig; Scherf: Comprehensive Detection of Isopeptides between Human Tissue Transglutaminase and Gluten Peptides. Nutrients 11 (10), 2019, 2263 mehr…
  • Meng, Chen; Basunia, Azfar; Peters, Bjoern; Gholami, Amin Moghaddas; Kuster, Bernhard; Culhane, Aedín C.: MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data. Molecular & Cellular Proteomics 18 (8 suppl 1), 2019, S153-S168 mehr…
  • Rechenberger, Julia; Samaras, Patroklos; Jarzab, Anna; Behr, Juergen; Frejno, Martin; Djukovic, Ana; Sanz, Jaime; González-Barberá, Eva; Salavert, Miguel; López-Hontangas, Jose; Xavier, Karina; Debrauwer, Laurent; Rolain, Jean-Marc; Sanz, Miguel; Garcia-Garcera, Marc; Wilhelm, Mathias; Ubeda, Carles; Kuster, Bernhard: Challenges in Clinical Metaproteomics Highlighted by the Analysis of Acute Leukemia Patients with Gut Colonization by Multidrug-Resistant Enterobacteriaceae. Proteomes 7 (1), 2019, 2 mehr…
  • Revskij, Denis; Haubold, Susanne; Viergutz, Torsten; Kröger-Koch, Claudia; Tuchscherer, Armin; Kienberger, Hermine; Rychlik, Michael; Tröscher, Arnulf; Hammon, Harald M.; Schuberth, Hans-Joachim; Mielenz, Manfred: Dietary Fatty Acids Affect Red Blood Cell Membrane Composition and Red Blood Cell ATP Release in Dairy Cows. International Journal of Molecular Sciences 20 (11), 2019, 2769 mehr…
  • Roehrer, Simon; Stork, Verena; Ludwig, Christina; Minceva, Mirjana; Behr, Jürgen: Analyzing bioactive effects of the minor hop compound xanthohumol C on human breast cancer cells using quantitative proteomics. PLOS ONE 14 (3), 2019, e0213469 mehr…
  • Ruschhaupt, Moritz; Mergner, Julia; Mucha, Stefanie; Papacek, Michael; Doch, Isabel; Tischer, Stefanie V; Hemmler, Daniel; Chiasson, David; Edel, Kai H; Kudla, Jörg; Schmitt‐Kopplin, Philippe; Kuster, Bernhard; Grill, Erwin: Rebuilding core abscisic acid signaling pathways of Arabidopsis in yeastde Rebuilding core abscisic acid signaling pathways of Arabidopsis in yeast. The EMBO Journal, 2019 mehr…
  • Salger, Mathias; Stark, Timo D.; Hofmann, Thomas: Taste Modulating Peptides from Overfermented Cocoa Beans. Journal of Agricultural and Food Chemistry, 2019 mehr…
  • Samaras, Patroklos; Schmidt, Tobias; Frejno, Martin; Gessulat, Siegfried; Reinecke, Maria; Jarzab, Anna; Zecha, Jana; Mergner, Julia; Giansanti, Piero; Ehrlich, Hans-Christian; Aiche, Stephan; Rank, Johannes; Kienegger, Harald; Krcmar, Helmut; Kuster, Bernhard; Wilhelm, Mathias: ProteomicsDB: a multi-omics and multi-organism resource for life science research. Nucleic Acids Research, 2019 mehr…
  • Sebald, Karin; Dunkel, Andreas; Hofmann, Thomas: Mapping Taste-Relevant Food Peptidomes by Means of Sequential Window Acquisition of All Theoretical Fragment Ion–Mass Spectrometry. Journal of Agricultural and Food Chemistry, 2019 mehr…
  • Seefried, Florian; Schmidt, Tobias; Reinecke, Maria; Heinzlmeir, Stephanie; Kuster, Bernhard; Wilhelm, Mathias: CiRCus: A Framework to Enable Classification of Complex High-Throughput Experiments. Journal of Proteome Research 18 (4), 2019, 1486-1493 mehr…
  • Stenton, Sarah Louise; Kremer, Laura Sophie; Kopajtich, Robert; Ludwig, Christina; Prokisch, Holger: The diagnosis of inborn errors of metabolism by an integrative “multi‐omics” approach: a perspective encompassing genomics, transcriptomics and proteomics. Journal of Inherited Metabolic Disease, 2019 mehr…
  • Xu, Di; Behr, Jürgen; Geißler, Andreas J.; Bechtner, Julia; Ludwig, Christina; Vogel, Rudi F.: Label-free quantitative proteomic analysis reveals the lifestyle of Lactobacillus hordei in the presence of Sacchromyces cerevisiae. International Journal of Food Microbiology 294, 2019, 18-26 mehr…
  • Zecha, Jana; Satpathy, Shankha; Kanashova, Tamara; Avanessian, Shayan C.; Kane, M. Harry; Clauser, Karl R.; Mertins, Philipp; Carr, Steven A.; Kuster, Bernhard: TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach. Molecular & Cellular Proteomics 18 (7), 2019, 1468-1478 mehr…

2018

  • Bader, Matthias; Stolle, Theresa; Jennerwein, Maximilian; Hauck, Jürgen; Sahin, Buket; Hofmann, Thomas: Chemosensate-Induced Modulation of the Salivary Proteome and Metabolome Alters the Sensory Perception of Salt Taste and Odor-Active Thiols. Journal of Agricultural and Food Chemistry 66 (29), 2018, 7740-7749 mehr…
  • Bauer, Norbert A.; Hoque, Enamul; Wolf, Manfred; Kleigrewe, Karin; Hofmann, Thomas: Detection of the formyl radical by EPR spin-trapping and mass spectrometry. Free Radical Biology and Medicine, 2018 mehr…
  • Deutsch, Eric W.; Perez-Riverol, Yasset; Chalkley, Robert J.; Wilhelm, Mathias; Tate, Stephen; Sachsenberg, Timo; Walzer, Mathias; Käll, Lukas; Delanghe, Bernard; Böcker, Sebastian; Schymanski, Emma L.; Wilmes, Paul; Dorfer, Viktoria; Kuster, Bernhard; Volders, Pieter-Jan; Jehmlich, Nico; Vissers, Johannes P. C.; Wolan, Dennis W.; Wang, Ana Y.; Mendoza, Luis; Shofstahl, Jim; Dowsey, Andrew W.; Griss, Johannes; Salek, Reza M.; Neumann, Steffen; Binz, Pierre-Alain; Lam, Henry; Vizcaíno, Juan Antonio; Bandeira, Nuno; Röst, Hannes: Expanding the Use of Spectral Libraries in Proteomics. Journal of Proteome Research 17 (12), 2018, 4051-4060 mehr…
  • Fromme, Tobias; Kleigrewe, Karin; Dunkel, Andreas; Retzler, Angelika; Li, Yongguo; Maurer, Stefanie; Fischer, Natascha; Diezko, Rolf; Kanzleiter, Timo; Hirschberg, Verena; Hofmann, Thomas; Klingenspor, Martin: Degradation of brown adipocyte purine nucleotides regulates uncoupling protein 1 activity. Molecular Metabolism 8, 2018, 77-85 mehr…
  • Geisslitz, Sabrina; Ludwig, Christina; Scherf, Katharina Anne; Koehler, Peter: Targeted LC–MS/MS Reveals Similar Contents of α-Amylase/Trypsin-Inhibitors as Putative Triggers of Nonceliac Gluten Sensitivity in All Wheat Species except Einkorn. Journal of Agricultural and Food Chemistry, 2018 mehr…
  • Giller, Katrin; Drews, Barbara; Berard, Joel; Kienberger, Hermine; Schmicke, Marion; Frank, Jan; Spanier, Britta; Daniel, Hannelore; Geisslinger, Gerd; Ulbrich, Susanne E: Bovine embryo elongation is altered due to maternal fatty acid supplementation. Biology of Reproduction, 2018 mehr…
  • Giller, Katrin; Drews, Barbara; Berard, Joel; Kienberger, Hermine; Schmicke, Marion; Frank, Jan; Spanier, Britta; Daniel, Hannelore; Geisslinger, Gerd; Ulbrich, Susanne E: Bovine embryo elongation is altered due to maternal fatty acid supplementation. Biology of Reproduction 99 (3), 2018, 600-610 mehr…
  • Hald, Christoph; Dawid, Corinna; Tressel, Ralf; Hofmann, Thomas: Kaempferol 3-O-(2‴-O-Sinapoyl-β-sophoroside) Causes the Undesired Bitter Taste of Canola/Rapeseed Protein Isolates. Journal of Agricultural and Food Chemistry 67 (1), 2018, 372-378 mehr…
  • Heinze, Simon; Zimmermann, Kerstin; Ludwig, Christina; Heinzlmeir, Stephanie; Schwarz, Wolfgang H.; Zverlov, Vladimir V.; Liebl, Wolfgang; Kornberger, Petra: Evaluation of promoter sequences for the secretory production of a Clostridium thermocellum cellulase in Paenibacillus polymyxa. Applied Microbiology and Biotechnology 102 (23), 2018, 10147-10159 mehr…
  • Jian, Ziying; Cheng, Tao; Zhang, Zhiheng; Raulefs, Susanne; Shi, Kuangyu; Steiger, Katja; Maeritz, Nadja; Kleigrewe, Karin; Hofmann, Thomas; Benitz, Simone; Bruns, Philipp; Lamp, Daniel; Jastroch, Martin; Akkan, Jan; Jäger, Carsten; Huang, Peilin; Nie, Shuang; Shen, Shanshan; Zou, Xiaoping; Ceyhan, Güralp O.; Michalski, Christoph W.; Friess, Helmut; Kleeff, Jörg; Kong, Bo: Glycemic Variability Promotes Both Local Invasion and Metastatic Colonization by Pancreatic Ductal Adenocarcinoma. Cellular and Molecular Gastroenterology and Hepatology, 2018 mehr…
  • Lee, Chien-Yun; Wang, Dongxue; Wilhelm, Mathias; Zolg, Daniel P.; Schmidt, Tobias; Schnatbaum, Karsten; Reimer, Ulf; Pontén, Fredrik; Uhlén, Mathias; Hahne, Hannes; Kuster, Bernhard: Mining the Human Tissue Proteome for Protein Citrullination. Molecular & Cellular Proteomics 17 (7), 2018, 1378-1391 mehr…
  • Ludwig, Christina; Gillet, Ludovic; Rosenberger, George; Amon, Sabine; Collins, Ben C; Aebersold, Ruedi: Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial. Molecular Systems Biology 14 (8), 2018, e8126 mehr…
  • Maurer, Stefanie F.; Dieckmann, Sebastian; Kleigrewe, Karin; Colson, Cécilia; Amri, Ez-Zoubir; Klingenspor, Martin: Fatty Acid Metabolites as Novel Regulators of Non-shivering Thermogenesis. In: Handbook of Experimental Pharmacology. Springer Berlin Heidelberg, 2018 mehr…
  • Prechtl, Roman M.; Janßen, Dorothee; Behr, Jürgen; Ludwig, Christina; Küster, Bernhard; Vogel, Rudi F.; Jakob, Frank: Sucrose-Induced Proteomic Response and Carbohydrate Utilization of Lactobacillus sakei TMW 1.411 During Dextran Formation. Frontiers in Microbiology 9, 2018 mehr…
  • Roehrer, Simon; Behr, Juergen; Stork, Verena; Ramires, Mara; Médard, Guillaume; Frank, Oliver; Kleigrewe, Karin; Hofmann, Thomas; Minceva, Mirjana: Xanthohumol C, a minor bioactive hop compound: Production, purification strategies and antimicrobial test. Journal of Chromatography B, 2018 mehr…
  • Schäfers, Stephanie; Meyer, Ulrich; von Soosten, Dirk; Krey, Britta; Hüther, Liane; Tröscher, Arnulf; Pelletier, Wolf; Kienberger, Hermine; Rychlik, Michael; Dänicke, Sven: Influence of vitamin E on organic matter fermentation, ruminal protein and fatty acid metabolism, protozoa concentrations and transfer of fatty acids. Journal of Animal Physiology and Animal Nutrition, 2018 mehr…
  • Sebald, Karin; Dunkel, Andreas; Schäfer, Johannes; Hinrichs, Jorg; Hofmann, Thomas: Sensoproteomics: A New Approach for the Identification of Taste-Active Peptides in Fermented Foods. Journal of Agricultural and Food Chemistry, 2018 mehr…
  • Sharma, Vagisha; Eckels, Josh; Schilling, Birgit; Ludwig, Christina; Jaffe, Jacob D.; MacCoss, Michael J.; MacLean, Brendan: Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline. Molecular & Cellular Proteomics 17 (6), 2018, 1239-1244 mehr…
  • Singldinger, Barbara; Dunkel, Andreas; Bahmann, Dominic; Bahmann, Claudia; Kadow, Daniel; Bisping, Bernward; Hofmann, Thomas: New Taste-Active 3-(O-β-D-Glucosyl)-2-oxoindole-3-acetic Acids and Diarylheptanoids in Cimiciato-Infected Hazelnuts. Journal of Agricultural and Food Chemistry, 2018 mehr…
  • Spreng, Stefan; Hofmann, Thomas: Activity-Guided Identification of in Vitro Antioxidants in Beer. Journal of Agricultural and Food Chemistry 66 (3), 2018, 720-731 mehr…
  • Xu, Di; Fels, Lea; Wefers, Daniel; Behr, Jürgen; Jakob, Frank; Vogel, Rudi F.: Lactobacillus hordei dextrans induce Saccharomyces cerevisiae aggregation and network formation on hydrophilic surfaces. International Journal of Biological Macromolecules 115, 2018, 236-242 mehr…
  • Yoon, Hongsup; Schaubeck, Monika; Lagkouvardos, Ilias; Blesl, Andreas; Heinzlmeir, Stephanie; Hahne, Hannes; Clavel, Thomas; Panda, Suchita; Ludwig, Christina; Kuster, Bernhard; Manichanh, Chaysavanh; Kump, Patrizia; Haller, Dirk; Hörmannsperger, Gabriele: Increased Pancreatic Protease Activity in Response to Antibiotics Impairs Gut Barrier and Triggers Colitis. Cellular and Molecular Gastroenterology and Hepatology 6 (3), 2018, 370-388.e3 mehr…
  • Zecha, Jana; Meng, Chen; Zolg, Daniel Paul; Samaras, Patroklos; Wilhelm, Mathias; Kuster, Bernhard: Peptide Level Turnover Measurements Enable the Study of Proteoform Dynamics. Molecular & Cellular Proteomics 17 (5), 2018, 974-992 mehr…
  • Zolg, Daniel Paul; Wilhelm, Mathias; Schmidt, Tobias; Médard, Guillaume; Zerweck, Johannes; Knaute, Tobias; Wenschuh, Holger; Reimer, Ulf; Schnatbaum, Karsten; Kuster, Bernhard: ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides. Molecular & Cellular Proteomics 17 (9), 2018, 1850-1863 mehr…

2017

  • Bader, Matthias; Lang, Tatjana; Lang, Roman; Hofmann, Thomas: Synephrine as a Specific Marker for Orange Consumption. Journal of Agricultural and Food Chemistry 65 (23), 2017, 4853-4858 mehr…
  • Brandt, Julia U.; Jakob, Frank; Geissler, Andreas J.; Behr, Jürgen; Vogel, Rudi F.: Multiple Genome Sequences of Heteropolysaccharide-Forming Acetic Acid Bacteria. Genome Announcements 5 (16), 2017, e00185-17 mehr…
  • Brignone, Desideria; Radmann, Pia; Behr, Jürgen; Vogel, Rudi F.: Boosting the growth of the probiotic strain Lactobacillus paracasei ssp. paracasei F19. Archives of Microbiology 199 (6), 2017, 853-862 mehr…
  • Feil, Gerhard; Horres, Ralf; Schulte, Julia; Mack, Andreas F.; Petzoldt, Svenja; Arnold, Caroline; Meng, Chen; Jost, Lukas; Boxleitner, Jochen; Kiessling-Wolf, Nicole; Serbest, Ender; Helm, Dominic; Kuster, Bernhard; Hartmann, Isabel; Korff, Thomas; Hahne, Hannes: Bacterial cellulose shifts transcriptome and proteome of cultured endothelial cells towards native differentiation. Molecular & Cellular Proteomics, 2017, mcp.000001.2017 mehr…
  • Frejno, Martin; Zenezini Chiozzi, Riccardo; Wilhelm, Mathias; Koch, Heiner; Zheng, Runsheng; Klaeger, Susan; Ruprecht, Benjamin; Meng, Chen; Kramer, Karl; Jarzab, Anna; Heinzlmeir, Stephanie; Johnstone, Elaine; Domingo, Enric; Kerr, David; Jesinghaus, Moritz; Slotta‐Huspenina, Julia; Weichert, Wilko; Knapp, Stefan; Feller, Stephan M; Kuster, Bernhard: Pharmacoproteomic characterisation of human colon and rectal cancer. Molecular Systems Biology 13 (11), 2017, 951 mehr…
  • Fromme, Tobias; Kleigrewe, Karin; Dunkel, Andreas; Retzler, Angelika; Li, Yongguo; Maurer, Stefanie; Fischer, Natascha; Diezko, Rolf; Kanzleiter, Timo; Hirschberg, Verena; Hofmann, Thomas; Klingenspor, Martin: Degradation of brown adipocyte purine nucleotides regulates uncoupling protein 1 activity. Molecular Metabolism, 2017 mehr…
  • Heinzlmeir, Stephanie; Lohse, Jonas; Treiber, Tobias; Kudlinzki, Denis; Linhard, Verena; Gande, Santosh Lakshmi; Sreeramulu, Sridhar; Saxena, Krishna; Liu, Xiaofeng; Wilhelm, Mathias; Schwalbe, Harald; Kuster, Bernhard; Médard, Guillaume: Chemoproteomics-Aided Medicinal Chemistry for the Discovery of EPHA2 Inhibitors. ChemMedChem 12 (12), 2017, 999-1011 mehr…
  • Hillreiner, Maria; Müller, Nadine I.; Koch, Heiner M.; Schmautz, Christiane; Küster, Bernhard; Pfaffl, Michael W.; Kliem, Heike: Establishment of a 3D cell culture model of primary bovine mammary epithelial cells extracted from fresh milk. In Vitro Cellular & Developmental Biology - Animal, 2017 mehr…
  • Hinz, Laura; Ahles, Andrea; Ruprecht, Benjamin; Küster, Bernhard; Engelhardt, Stefan: Two serines in the distal C-terminus of the human ß1-adrenoceptor determine ß-arrestin2 recruitment. PLOS ONE 12 (5), 2017, e0176450 mehr…
  • Klaeger, Susan; Heinzlmeir, Stephanie; Wilhelm, Mathias; Polzer, Harald; Vick, Binje; Koenig, Paul-Albert; Reinecke, Maria; Ruprecht, Benjamin; Petzoldt, Svenja; Meng, Chen; Zecha, Jana; Reiter, Katrin; Qiao, Huichao; Helm, Dominic; Koch, Heiner; Schoof, Melanie; Canevari, Giulia; Casale, Elena; Depaolini, Stefania Re; Feuchtinger, Annette; Wu, Zhixiang; Schmidt, Tobias; Rueckert, Lars; Becker, Wilhelm; Huenges, Jan; Garz, Anne-Kathrin; Gohlke, Bjoern-Oliver; Zolg, Daniel Paul; Kayser, Gian; Vooder, Tonu; Preissner, Robert; Hahne, Hannes; Tõnisson, Neeme; Kramer, Karl; Götze, Katharina; Bassermann, Florian; Schlegl, Judith; Ehrlich, Hans-Christian; Aiche, Stephan; Walch, Axel; Greif, Philipp A.; Schneider, Sabine; Felder, Eduard Rudolf; Ruland, Juergen; Médard, Guillaume; Jeremias, Irmela; Spiekermann, Karsten; Kuster, Bernhard: The target landscape of clinical kinase drugs. Science 358 (6367), 2017, eaan4368 mehr…
  • Lang, Roman; Lang, Tatjana; Bader, Matthias; Beusch, Anja; Schlagbauer, Verena; Hofmann, Thomas: High-Throughput Quantitation of Proline Betaine in Foods and Suitability as a Valid Biomarker for Citrus Consumption. Journal of Agricultural and Food Chemistry 65 (8), 2017, 1613-1619 mehr…
  • Lauterbach, Alexander; Usbeck, Julia C.; Behr, Jürgen; Vogel, Rudi F.: MALDI-TOF MS typing enables the classification of brewing yeasts of the genus Saccharomyces to major beer styles. PLOS ONE 12 (8), 2017, e0181694 mehr…
  • Rosenberger, George; Liu, Yansheng; Röst, Hannes L; Ludwig, Christina; Buil, Alfonso; Bensimon, Ariel; Soste, Martin; Spector, Tim D; Dermitzakis, Emmanouil T; Collins, Ben C; Malmström, Lars; Aebersold, Ruedi: Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nature Biotechnology, 2017 mehr…
  • Ruprecht, Benjamin; Koch, Heiner; Domasinska, Petra; Frejno, Martin; Kuster, Bernhard; Lemeer, Simone: Optimized Enrichment of Phosphoproteomes by Fe-IMAC Column Chromatography. In: Methods in Molecular Biology. Springer Nature, 2017 mehr…
  • Ruprecht, Benjamin; Wang, Dongxue; Chiozzi, Riccardo Zenezini; Li, Li-Hua; Hahne, Hannes; Kuster, Bernhard: Hydrophilic Strong Anion Exchange (hSAX) Chromatography Enables Deep Fractionation of Tissue Proteomes. In: Methods in Molecular Biology. Springer Nature, 2017 mehr…
  • Ruprecht, Benjamin; Zaal, Esther A.; Zecha, Jana; Wu, Wei; Berkers, Celia R.; Kuster, Bernhard; Lemeer, Simone: Lapatinib Resistance in Breast Cancer Cells Is Accompanied by Phosphorylation-Mediated Reprogramming of Glycolysis. Cancer Research 77 (8), 2017, 1842-1853 mehr…
  • Ruprecht, Benjamin; Zecha, Jana; Zolg, Daniel P.; Kuster, Bernhard: High pH Reversed-Phase Micro-Columns for Simple, Sensitive, and Efficient Fractionation of Proteome and (TMT labeled) Phosphoproteome Digests. In: Methods in Molecular Biology. Springer Nature, 2017 mehr…
  • Schmidt, Tobias; Samaras, Patroklos; Frejno, Martin; Gessulat, Siegfried; Barnert, Maximilian; Kienegger, Harald; Krcmar, Helmut; Schlegl, Judith; Ehrlich, Hans-Christian; Aiche, Stephan; Kuster, Bernhard; Wilhelm, Mathias: ProteomicsDB. Nucleic Acids Research, 2017 mehr…
  • Schott, Ann-Sophie; Behr, Jürgen; Geißler, Andreas J.; Kuster, Bernhard; Hahne, Hannes; Vogel, Rudi F.: Quantitative Proteomics for the Comprehensive Analysis of Stress Responses of Lactobacillus paracasei subsp. paracasei F19. Journal of Proteome Research 16 (10), 2017, 3816-3829 mehr…
  • Singldinger, Barbara; Dunkel, Andreas; Hofmann, Thomas: The Cyclic Diarylheptanoid Asadanin as the Main Contributor to the Bitter Off-Taste in Hazelnuts (Corylus avellana L.). Journal of Agricultural and Food Chemistry 65 (8), 2017, 1677-1683 mehr…
  • Tischer, Stefanie V.; Wunschel, Christian; Papacek, Michael; Kleigrewe, Karin; Hofmann, Thomas; Christmann, Alexander; Grill, Erwin: Combinatorial interaction network of abscisic acid receptors and coreceptors fromArabidopsis thaliana. Proceedings of the National Academy of Sciences 114 (38), 2017, 10280-10285 mehr…
  • Yu, Peng; Petzoldt, Svenja; Wilhelm, Mathias; Zolg, Daniel Paul; Zheng, Runsheng; Sun, Xuefei; Liu, Xiaodong; Schneider, Günter; Huhmer, Andreas; Kuster, Bernhard: Trimodal Mixed Mode Chromatography That Enables Efficient Offline Two-Dimensional Peptide Fractionation for Proteome Analysis. Analytical Chemistry 89 (17), 2017, 8884-8891 mehr…
  • Zolg, Daniel P; Wilhelm, Mathias; Schnatbaum, Karsten; Zerweck, Johannes; Knaute, Tobias; Delanghe, Bernard; Bailey, Derek J; Gessulat, Siegfried; Ehrlich, Hans-Christian; Weininger, Maximilian; Yu, Peng; Schlegl, Judith; Kramer, Karl; Schmidt, Tobias; Kusebauch, Ulrike; Deutsch, Eric W; Aebersold, Ruedi; Moritz, Robert L; Wenschuh, Holger; Moehring, Thomas; Aiche, Stephan; Huhmer, Andreas; Reimer, Ulf; Kuster, Bernhard: Building ProteomeTools based on a complete synthetic human proteome. Nature Methods 14 (3), 2017, 259-262 mehr…
  • Zolg, Daniel Paul; Wilhelm, Mathias; Yu, Peng; Knaute, Tobias; Zerweck, Johannes; Wenschuh, Holger; Reimer, Ulf; Schnatbaum, Karsten; Kuster, Bernhard: PROCAL: A Set of 40 Peptide Standards for Retention Time Indexing, Column Performance Monitoring, and Collision Energy Calibration. PROTEOMICS 17 (21), 2017, 1700263 mehr…

2016

  • Aebersold, Ruedi; Bensimon, Ariel; Collins, Ben C.; Ludwig, Christina; Sabido, Eduard: Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH. PROTEOMICS 16 (15-16), 2016, 2065-2067 mehr…
  • Dresel, Michael; Vogt, Christian; Dunkel, Andreas; Hofmann, Thomas: The Bitter Chemodiversity of Hops (Humulus lupulus L.). Journal of Agricultural and Food Chemistry 64 (41), 2016, 7789-7799 mehr…
  • Gande, Santosh L.; Saxena, Krishna; Sreeramulu, Sridhar; Linhard, Verena; Kudlinzki, Denis; Heinzlmeir, Stephanie; Reichert, Andreas J.; Skerra, Arne; Kuster, Bernhard; Schwalbe, Harald: Expression and Purification of EPHA2 Tyrosine Kinase Domain for Crystallographic and NMR Studies. ChemBioChem 17 (23), 2016, 2257-2263 mehr…
  • Geissler, Andreas J.; Behr, Jürgen; Vogel, Rudi F.: Multiple Genome Sequences of the Important Beer-Spoiling SpeciesLactobacillus backii: TABLE 1 . Genome Announcements 4 (4), 2016, e00826-16 mehr…
  • Geissler, Andreas J.; Behr, Jürgen; Vogel, Rudi F.: Multiple Genome Sequences of Important Beer-Spoiling Lactic Acid Bacteria: TABLE 1 . Genome Announcements 4 (5), 2016, e01077-16 mehr…
  • Günther-Jordanland, Kirsten; Dawid, Corinna; Dietz, Maximilian; Hofmann, Thomas: Key Phytochemicals Contributing to the Bitter Off-Taste of Oat (Avena sativa L.). Journal of Agricultural and Food Chemistry 64 (51), 2016, 9639-9652 mehr…
  • Heinzlmeir, Stephanie; Kudlinzki, Denis; Sreeramulu, Sridhar; Klaeger, Susan; Gande, Santosh Lakshmi; Linhard, Verena; Wilhelm, Mathias; Qiao, Huichao; Helm, Dominic; Ruprecht, Benjamin; Saxena, Krishna; Médard, Guillaume; Schwalbe, Harald; Kuster, Bernhard: Chemical Proteomics and Structural Biology Define EPHA2 Inhibition by Clinical Kinase Drugs. ACS Chemical Biology 11 (12), 2016, 3400-3411 mehr…
  • Hillmann, Hedda; Behr, Jürgen; Ehrmann, Matthias A.; Vogel, Rudi F.; Hofmann, Thomas: Formation of Kokumi-Enhancing γ-Glutamyl Dipeptides in Parmesan Cheese by Means of γ-Glutamyltransferase Activity and Stable Isotope Double-Labeling Studies. Journal of Agricultural and Food Chemistry 64 (8), 2016, 1784-1793 mehr…
  • Hillmann, Hedda; Hofmann, Thomas: Quantitation of Key Tastants and Re-engineering the Taste of Parmesan Cheese. Journal of Agricultural and Food Chemistry 64 (8), 2016, 1794-1805 mehr…
  • Klaeger, Susan; Gohlke, Bjoern; Perrin, Jessica; Gupta, Vipul; Heinzlmeir, Stephanie; Helm, Dominic; Qiao, Huichao; Bergamini, Giovanna; Handa, Hiroshi; Savitski, Mikhail M; Bantscheff, Marcus; Médard, Guillaume; Preissner, Robert; Kuster, Bernhard: Chemical Proteomics Reveals Ferrochelatase as a Common Off-target of Kinase Inhibitors. ACS Chemical Biology 11 (5), 2016, 1245-1254 mehr…
  • Kleigrewe, Karin; Gerwick, Lena; Sherman, David H.; Gerwick, William H.: Unique marine derived cyanobacterial biosynthetic genes for chemical diversity. Nat. Prod. Rep. 33 (2), 2016, 348-364 mehr…
  • Koch, Heiner; Wilhelm, Mathias; Ruprecht, Benjamin; Beck, Scarlet; Frejno, Martin; Klaeger, Susan; Kuster, Bernhard: Phosphoproteome Profiling Reveals Molecular Mechanisms of Growth-Factor-Mediated Kinase Inhibitor Resistance in EGFR-Overexpressing Cancer Cells. Journal of Proteome Research 15 (12), 2016, 4490-4504 mehr…
  • Koch, Heiner; Wilhelm, Mathias; Ruprecht, Benjamin; Beck, Scarlet; Frejno, Martin; Klaeger, Susan; Kuster, Bernhard: Phosphoproteome Profiling Reveals Molecular Mechanisms of Growth-Factor-Mediated Kinase Inhibitor Resistance in EGFR-Overexpressing Cancer Cells. Journal of Proteome Research 15 (12), 2016, 4490-4504 mehr…
  • Lohr, Kerstin; Pachl, Fiona; Moghaddas Gholami, Amin; Geillinger, Kerstin E.; Daniel, Hannelore; Kuster, Bernhard; Klingenspor, Martin: Reduced mitochondrial mass and function add to age‐related susceptibility toward diet‐induced fatty liver in C57BL/6J mice. Physiological Reports 4 (19), 2016, e12988 mehr…
  • Meng, Chen; Helm, Dominic; Frejno, Martin; Kuster, Bernhard: moCluster: Identifying Joint Patterns Across Multiple Omics Data Sets. Journal of Proteome Research 15 (3), 2016, 755-765 mehr…
  • Meng, Chen; Zeleznik, Oana A.; Thallinger, Gerhard G.; Kuster, Bernhard; Gholami, Amin M.; Culhane, Aedín C.: Dimension reduction techniques for the integrative analysis of multi-omics data. Briefings in Bioinformatics 17 (4), 2016, 628-641 mehr…
  • Meyer, Stefanie; Dunkel, Andreas; Hofmann, Thomas: Sensomics-Assisted Elucidation of the Tastant Code of Cooked Crustaceans and Taste Reconstruction Experiments. Journal of Agricultural and Food Chemistry 64 (5), 2016, 1164-1175 mehr…
  • Neuhaus, Klaus; Landstorfer, Richard; Fellner, Lea; Simon, Svenja; Schafferhans, Andrea; Goldberg, Tatyana; Marx, Harald; Ozoline, Olga N.; Rost, Burkhard; Kuster, Bernhard; Keim, Daniel A.; Scherer, Siegfried: Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC). BMC Genomics 17 (1), 2016 mehr…
  • Ostrovskyi, Dmytro; Rumpf, Tobias; Eib, Julia; Lumbroso, Alexandre; Slynko, Inna; Klaeger, Susan; Heinzlmeir, Stephanie; Forster, Michael; Gehringer, Matthias; Pfaffenrot, Ellen; Bauer, Silke Mona; Schmidtkunz, Karin; Wenzler, Sandra; Metzger, Eric; Kuster, Bernhard; Laufer, Stefan; Schüle, Roland; Sippl, Wolfgang; Breit, Bernhard; Jung, Manfred: Tofacitinib and analogs as inhibitors of the histone kinase PRK1 (PKN1). Future Medicinal Chemistry 8 (13), 2016, 1537-1551 mehr…
  • Ruprecht, Benjamin; Roesli, Christoph; Lemeer, Simone; Kuster, Bernhard: MALDI-TOF and nESI Orbitrap MS/MS identify orthogonal parts of the phosphoproteome. PROTEOMICS 16 (10), 2016, 1447-1456 mehr…
  • Schott, Ann-Sophie; Behr, Jürgen; Quinn, Jennifer; Vogel, Rudi F.: MALDI-TOF Mass Spectrometry Enables a Comprehensive and Fast Analysis of Dynamics and Qualities of Stress Responses of Lactobacillus paracasei subsp. paracasei F19. PLOS ONE 11 (10), 2016, e0165504 mehr…
  • Slynko, Inna; Schmidtkunz, Karin; Rumpf, Tobias; Klaeger, Susan; Heinzlmeir, Stephanie; Najar, Abdulkarim; Metzger, Eric; Kuster, Bernhard; Schüle, Roland; Jung, Manfred; Sippl, Wolfgang: Identification of Highly Potent Protein Kinase C-Related Kinase 1 Inhibitors by Virtual Screening, Binding Free Energy Rescoring, and in vitro Testing. ChemMedChem 11 (18), 2016, 2084-2094 mehr…
  • Treindl, Fridolin; Ruprecht, Benjamin; Beiter, Yvonne; Schultz, Silke; Döttinger, Anette; Staebler, Annette; Joos, Thomas O.; Kling, Simon; Poetz, Oliver; Fehm, Tanja; Neubauer, Hans; Kuster, Bernhard; Templin, Markus F.: A bead-based western for high-throughput cellular signal transduction analyses. Nature Communications 7, 2016, 12852 mehr…
  • Yu, Peng; Hahne, Hannes; Wilhelm, Mathias; Kuster, Bernhard: Ethylene glycol improves electrospray ionization efficiency in bottom-up proteomics. Analytical and Bioanalytical Chemistry 409 (4), 2016, 1049-1057 mehr…
  • da Silva, Barbara Ferreira; Meng, Chen; Helm, Dominic; Pachl, Fiona; Schiller, Jürgen; Ibrahim, Emad; Lynne, Charles M.; Brackett, Nancy L.; Bertolla, Ricardo Pimenta; Kuster, Bernhard: Towards Understanding Male Infertility After Spinal Cord Injury Using Quantitative Proteomics. Molecular & Cellular Proteomics 15 (4), 2016, 1424-1434 mehr…

2015

  • Hao, Yanqi; Colak, Recep; Teyra, Joan; Corbi-Verge, Carles; Ignatchenko, Alexander; Hahne, Hannes; Wilhelm, Mathias; Kuster, Bernhard; Braun, Pascal; Kaida, Daisuke; Kislinger, Thomas; Kim, Philip M.: Semi-supervised Learning Predicts Approximately One Third of the Alternative Splicing Isoforms as Functional Proteins. Cell Reports 12 (2), 2015, 183-189 mehr…
  • Koch, Heiner; Busto, M. Estela Del Castillo; Kramer, Karl; Médard, Guillaume; Kuster, Bernhard: Chemical Proteomics Uncovers EPHA2 as a Mechanism of Acquired Resistance to Small Molecule EGFR Kinase Inhibition. Journal of Proteome Research 14 (6), 2015, 2617-2625 mehr…
  • Marxen, Sandra; Stark, Timo D.; Rütschle, Andrea; Lücking, Genia; Frenzel, Elrike; Scherer, Siegfried; Ehling-Schulz, Monika; Hofmann, Thomas: Depsipeptide Intermediates Interrogate Proposed Biosynthesis of Cereulide, the Emetic Toxin of Bacillus cereus. Scientific Reports 5, 2015, 10637 mehr…
  • Ruprecht, Benjamin; Zecha, Jana; Heinzlmeir, Stephanie; Médard, Guillaume; Lemeer, Simone; Kuster, Bernhard: Evaluation of Kinase Activity Profiling Using Chemical Proteomics. ACS Chemical Biology 10 (12), 2015, 2743-2752 mehr…
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